miRNA display CGI


Results 21 - 40 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31069 5' -66.6 NC_006560.1 + 58623 0.66 0.464945
Target:  5'- -gCGGCCaGgGCCGCCUgguCGgacuucuucaGCGCCCg -3'
miRNA:   3'- caGCCGGgCgCGGCGGGu--GC----------CGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 885 0.66 0.464945
Target:  5'- -gCGcGCCCGCcccccgccgggGCCGCCgGCcGCuCCCg -3'
miRNA:   3'- caGC-CGGGCG-----------CGGCGGgUGcCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 30789 0.66 0.464945
Target:  5'- --aGGCCCGgagucaaGCCcggGCCCagGCGGCccugGCCCa -3'
miRNA:   3'- cagCCGGGCg------CGG---CGGG--UGCCG----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 64730 0.66 0.464945
Target:  5'- -gCGuaCCGCaGCaGCCCgaacucGCGGUACCCg -3'
miRNA:   3'- caGCcgGGCG-CGgCGGG------UGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 99917 0.66 0.464945
Target:  5'- uGUCGGCCuCGgGgCGCUCG-GGCGCg- -3'
miRNA:   3'- -CAGCCGG-GCgCgGCGGGUgCCGUGgg -5'
31069 5' -66.6 NC_006560.1 + 143421 0.66 0.464945
Target:  5'- --aGGCgCGCacacccCCGuCCCGCGGUacGCCCg -3'
miRNA:   3'- cagCCGgGCGc-----GGC-GGGUGCCG--UGGG- -5'
31069 5' -66.6 NC_006560.1 + 83833 0.66 0.464945
Target:  5'- -cUGGUgCGgGCCuacuggcugGCCCuGCGGCGCCUc -3'
miRNA:   3'- caGCCGgGCgCGG---------CGGG-UGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 54099 0.66 0.46408
Target:  5'- --gGGCCCGaGCC-CCCGaaccuacCGGCGCaCCg -3'
miRNA:   3'- cagCCGGGCgCGGcGGGU-------GCCGUG-GG- -5'
31069 5' -66.6 NC_006560.1 + 134610 0.66 0.46408
Target:  5'- aGUCGaagaggaGCCgGuCGCCgGCCCagaGCGGCGgCCa -3'
miRNA:   3'- -CAGC-------CGGgC-GCGG-CGGG---UGCCGUgGG- -5'
31069 5' -66.6 NC_006560.1 + 22501 0.66 0.462354
Target:  5'- -cCGGCgCCGcCGCCGCCgucgacgcgaaccuCGCcgccGGCGCCg -3'
miRNA:   3'- caGCCG-GGC-GCGGCGG--------------GUG----CCGUGGg -5'
31069 5' -66.6 NC_006560.1 + 20209 0.66 0.459771
Target:  5'- cGUCGGCCga-GCCGUCCGagucggagucggaguCGGaGCCCa -3'
miRNA:   3'- -CAGCCGGgcgCGGCGGGU---------------GCCgUGGG- -5'
31069 5' -66.6 NC_006560.1 + 3043 0.66 0.456339
Target:  5'- --gGGCCCGaggcgcggaGCgGCCCgagggcGCGGCcggaGCCCg -3'
miRNA:   3'- cagCCGGGCg--------CGgCGGG------UGCCG----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 4206 0.66 0.456339
Target:  5'- -gCGGCCaugGCGuaGCCCagguGCGGCACg- -3'
miRNA:   3'- caGCCGGg--CGCggCGGG----UGCCGUGgg -5'
31069 5' -66.6 NC_006560.1 + 76797 0.66 0.456339
Target:  5'- -gCGGacgcgcacuaCCCGCGCCuCCCggccaaggacaGgGGCGCCCu -3'
miRNA:   3'- caGCC----------GGGCGCGGcGGG-----------UgCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 25121 0.66 0.456339
Target:  5'- -cCGcGCCUGCGCgCGCuggggCCugGGUGCgCCg -3'
miRNA:   3'- caGC-CGGGCGCG-GCG-----GGugCCGUG-GG- -5'
31069 5' -66.6 NC_006560.1 + 25305 0.66 0.456339
Target:  5'- -cCGGacCCCGcCGCCGCgCCGCGcguGCGCUg -3'
miRNA:   3'- caGCC--GGGC-GCGGCG-GGUGC---CGUGGg -5'
31069 5' -66.6 NC_006560.1 + 38641 0.66 0.456339
Target:  5'- -gCGGCgCCGCGCgcacagcuCGUCCAgCGGCAgCa -3'
miRNA:   3'- caGCCG-GGCGCG--------GCGGGU-GCCGUgGg -5'
31069 5' -66.6 NC_006560.1 + 46870 0.66 0.456339
Target:  5'- cUCGaGCCCGUcCCGCgCGaguaUGGCAUCCc -3'
miRNA:   3'- cAGC-CGGGCGcGGCGgGU----GCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 99999 0.66 0.456339
Target:  5'- cGUCGcGCCCgggaaGCGCCcuuuauaCCCGCGGUcggGCCg -3'
miRNA:   3'- -CAGC-CGGG-----CGCGGc------GGGUGCCG---UGGg -5'
31069 5' -66.6 NC_006560.1 + 69726 0.66 0.455483
Target:  5'- cUCGGUCCuccuggcCGCCGCCaCGCgcauucgcuucccGGCGCUCg -3'
miRNA:   3'- cAGCCGGGc------GCGGCGG-GUG-------------CCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.