miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3107 5' -51.9 NC_001493.1 + 97316 0.66 0.986145
Target:  5'- -aUGGUACAUGUGAACacUGAAGcgGAa -3'
miRNA:   3'- gcACCGUGUGCACUUGccACUUCa-CU- -5'
3107 5' -51.9 NC_001493.1 + 15500 0.66 0.986145
Target:  5'- aGUGGCcugUugGUGGAuCGGUGAA-UGGa -3'
miRNA:   3'- gCACCGu--GugCACUU-GCCACUUcACU- -5'
3107 5' -51.9 NC_001493.1 + 24603 0.66 0.980286
Target:  5'- aGUGGCuCGCcgaugaugGUGAugAUGGUGAuGGUGAu -3'
miRNA:   3'- gCACCGuGUG--------CACU--UGCCACU-UCACU- -5'
3107 5' -51.9 NC_001493.1 + 45631 0.67 0.966697
Target:  5'- gCGUGGCACAgacCGgGAaccuacagACGGUG-GGUGGg -3'
miRNA:   3'- -GCACCGUGU---GCaCU--------UGCCACuUCACU- -5'
3107 5' -51.9 NC_001493.1 + 131055 0.67 0.963336
Target:  5'- aGUGGCcugUugGUGGAuCGGUGAauggagacccGGUGGc -3'
miRNA:   3'- gCACCGu--GugCACUU-GCCACU----------UCACU- -5'
3107 5' -51.9 NC_001493.1 + 17569 0.68 0.951854
Target:  5'- -cUGGCGCGCGUGGACGaGuUGAucggccucGUGGc -3'
miRNA:   3'- gcACCGUGUGCACUUGC-C-ACUu-------CACU- -5'
3107 5' -51.9 NC_001493.1 + 133124 0.68 0.951854
Target:  5'- -cUGGCGCGCGUGGACGaGuUGAucggccucGUGGc -3'
miRNA:   3'- gcACCGUGUGCACUUGC-C-ACUu-------CACU- -5'
3107 5' -51.9 NC_001493.1 + 96206 0.68 0.946203
Target:  5'- aCGUGGUgugauacaugaaacACGCGUGAACaGUGA--UGAa -3'
miRNA:   3'- -GCACCG--------------UGUGCACUUGcCACUucACU- -5'
3107 5' -51.9 NC_001493.1 + 93936 0.69 0.91642
Target:  5'- aCGUGGCGCAcacguuccaccCGUGcACGGUGGAu--- -3'
miRNA:   3'- -GCACCGUGU-----------GCACuUGCCACUUcacu -5'
3107 5' -51.9 NC_001493.1 + 40550 0.7 0.904023
Target:  5'- gGUGGUAUcgaagaACGUaucGAGCGGUGGAGUc- -3'
miRNA:   3'- gCACCGUG------UGCA---CUUGCCACUUCAcu -5'
3107 5' -51.9 NC_001493.1 + 132067 0.7 0.890634
Target:  5'- cCGUGGCACAacccccgGUGAGaggacCGGUGAGGg-- -3'
miRNA:   3'- -GCACCGUGUg------CACUU-----GCCACUUCacu -5'
3107 5' -51.9 NC_001493.1 + 16513 0.7 0.890634
Target:  5'- cCGUGGCACAacccccgGUGAGaggacCGGUGAGGg-- -3'
miRNA:   3'- -GCACCGUGUg------CACUU-----GCCACUUCacu -5'
3107 5' -51.9 NC_001493.1 + 133719 0.7 0.890634
Target:  5'- uGUGGCGCAgG-GGGCGaaGAGGUGGa -3'
miRNA:   3'- gCACCGUGUgCaCUUGCcaCUUCACU- -5'
3107 5' -51.9 NC_001493.1 + 92042 0.71 0.861001
Target:  5'- cCGUGGUGaacaaggauCugGUGGACGGcagGggGUGGa -3'
miRNA:   3'- -GCACCGU---------GugCACUUGCCa--CuuCACU- -5'
3107 5' -51.9 NC_001493.1 + 18164 0.71 0.844845
Target:  5'- uGUGGCGCAgGgGGACGaaGAGGUGGa -3'
miRNA:   3'- gCACCGUGUgCaCUUGCcaCUUCACU- -5'
3107 5' -51.9 NC_001493.1 + 109730 0.72 0.827869
Target:  5'- aGUGGCaACACGUGuuguCGGUGgAAGUu- -3'
miRNA:   3'- gCACCG-UGUGCACuu--GCCAC-UUCAcu -5'
3107 5' -51.9 NC_001493.1 + 97192 1.1 0.005841
Target:  5'- gCGUGGCACACGUGAACGGUGAAGUGAa -3'
miRNA:   3'- -GCACCGUGUGCACUUGCCACUUCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.