miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31076 3' -60.5 NC_006560.1 + 118735 0.66 0.720582
Target:  5'- gAGCCGCacccCCGaCGGCUguccCCggCGUCCAGg -3'
miRNA:   3'- -UCGGCGa---GGUgGUCGA----GGa-GCAGGUC- -5'
31076 3' -60.5 NC_006560.1 + 71781 0.66 0.720582
Target:  5'- aGGUgGCUUUcuucgGCCAGC-CCUCG-CCGGg -3'
miRNA:   3'- -UCGgCGAGG-----UGGUCGaGGAGCaGGUC- -5'
31076 3' -60.5 NC_006560.1 + 63041 0.66 0.720582
Target:  5'- cAGCCuCUcCCACUcGC-CCUCGUaCCGGg -3'
miRNA:   3'- -UCGGcGA-GGUGGuCGaGGAGCA-GGUC- -5'
31076 3' -60.5 NC_006560.1 + 84433 0.66 0.720582
Target:  5'- gGGCCggcGCUCCGCCcacGGCcgCC-CGUCCc- -3'
miRNA:   3'- -UCGG---CGAGGUGG---UCGa-GGaGCAGGuc -5'
31076 3' -60.5 NC_006560.1 + 50992 0.66 0.720582
Target:  5'- cGGCCGCcuUCCG-CAGCUCCgggggGUCCc- -3'
miRNA:   3'- -UCGGCG--AGGUgGUCGAGGag---CAGGuc -5'
31076 3' -60.5 NC_006560.1 + 60945 0.66 0.720582
Target:  5'- cGCCGCcgCCACguGCUCCaCGacgCCGc -3'
miRNA:   3'- uCGGCGa-GGUGguCGAGGaGCa--GGUc -5'
31076 3' -60.5 NC_006560.1 + 102447 0.66 0.720582
Target:  5'- cGCCGCggCCGCCGuCUCCagGgccUCCAGc -3'
miRNA:   3'- uCGGCGa-GGUGGUcGAGGagC---AGGUC- -5'
31076 3' -60.5 NC_006560.1 + 23739 0.66 0.710868
Target:  5'- aGGCCGCcgucgCCGCCGuGCgcgccgugggCCUCGUcgCCGGc -3'
miRNA:   3'- -UCGGCGa----GGUGGU-CGa---------GGAGCA--GGUC- -5'
31076 3' -60.5 NC_006560.1 + 4900 0.66 0.710868
Target:  5'- gGGCCGCgUCgCGCUcgGGgUCCggGUCCGGg -3'
miRNA:   3'- -UCGGCG-AG-GUGG--UCgAGGagCAGGUC- -5'
31076 3' -60.5 NC_006560.1 + 70706 0.66 0.70109
Target:  5'- cGCCGCcacgggCCcCCGGCgcguggCCgaguUCGUCCGGg -3'
miRNA:   3'- uCGGCGa-----GGuGGUCGa-----GG----AGCAGGUC- -5'
31076 3' -60.5 NC_006560.1 + 16433 0.66 0.70109
Target:  5'- cGCCgGCUCCcuuuuguacgggGCCGcGCUCCUCGaCCc- -3'
miRNA:   3'- uCGG-CGAGG------------UGGU-CGAGGAGCaGGuc -5'
31076 3' -60.5 NC_006560.1 + 42185 0.66 0.691256
Target:  5'- gGGCCGU--CGCCGuaCUCCUCGUCCc- -3'
miRNA:   3'- -UCGGCGagGUGGUc-GAGGAGCAGGuc -5'
31076 3' -60.5 NC_006560.1 + 539 0.66 0.691256
Target:  5'- cGGCCGCgCC-CCGGgUCCccggCGUCCc- -3'
miRNA:   3'- -UCGGCGaGGuGGUCgAGGa---GCAGGuc -5'
31076 3' -60.5 NC_006560.1 + 66249 0.66 0.691256
Target:  5'- cGGgCGC-CCGaagcaCAGCUCggCGUCCAGg -3'
miRNA:   3'- -UCgGCGaGGUg----GUCGAGgaGCAGGUC- -5'
31076 3' -60.5 NC_006560.1 + 115664 0.66 0.681376
Target:  5'- uGUCGCugaUCCcCCGGCUCUUCGcCCuGa -3'
miRNA:   3'- uCGGCG---AGGuGGUCGAGGAGCaGGuC- -5'
31076 3' -60.5 NC_006560.1 + 72122 0.66 0.681376
Target:  5'- cGGCCGC-CCugCGGCUgUaCGgagCCAGc -3'
miRNA:   3'- -UCGGCGaGGugGUCGAgGaGCa--GGUC- -5'
31076 3' -60.5 NC_006560.1 + 122952 0.66 0.680385
Target:  5'- cGGCCugaucguGCUCC-UgGGCUUCUCGcUCCAGc -3'
miRNA:   3'- -UCGG-------CGAGGuGgUCGAGGAGC-AGGUC- -5'
31076 3' -60.5 NC_006560.1 + 110477 0.66 0.675428
Target:  5'- cGCCGCcgCCGCCAacuucugccuggcucGCUUCUgGgCCAGg -3'
miRNA:   3'- uCGGCGa-GGUGGU---------------CGAGGAgCaGGUC- -5'
31076 3' -60.5 NC_006560.1 + 39683 0.66 0.671456
Target:  5'- gGGCCGCcCCGCC-GCccucuUCUUCG-CCGGa -3'
miRNA:   3'- -UCGGCGaGGUGGuCG-----AGGAGCaGGUC- -5'
31076 3' -60.5 NC_006560.1 + 31293 0.66 0.671456
Target:  5'- cGCCGCUCCGCCuccGC-CCgcCGcUCCGc -3'
miRNA:   3'- uCGGCGAGGUGGu--CGaGGa-GC-AGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.