miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31076 3' -60.5 NC_006560.1 + 69109 0.66 0.671456
Target:  5'- gAGCCGCcgUCCGCCGGCgCCcagCGgcgCCu- -3'
miRNA:   3'- -UCGGCG--AGGUGGUCGaGGa--GCa--GGuc -5'
31076 3' -60.5 NC_006560.1 + 97764 0.66 0.670463
Target:  5'- cAGCCGCccccuggucagcuUCCGCUacgaggccgacgGGC-CCUCGUCgAGg -3'
miRNA:   3'- -UCGGCG-------------AGGUGG------------UCGaGGAGCAGgUC- -5'
31076 3' -60.5 NC_006560.1 + 44692 0.67 0.661507
Target:  5'- gGGCCGCggacaagucggCCgACguGCUCgUCGcCCAGg -3'
miRNA:   3'- -UCGGCGa----------GG-UGguCGAGgAGCaGGUC- -5'
31076 3' -60.5 NC_006560.1 + 63835 0.67 0.661507
Target:  5'- uGUCGCagCGCCGGgcCUCCUCGcccgCCAGc -3'
miRNA:   3'- uCGGCGagGUGGUC--GAGGAGCa---GGUC- -5'
31076 3' -60.5 NC_006560.1 + 131692 0.67 0.661507
Target:  5'- gGGCUGCUCCGCCcggaggAGCcccCCcCGUCCc- -3'
miRNA:   3'- -UCGGCGAGGUGG------UCGa--GGaGCAGGuc -5'
31076 3' -60.5 NC_006560.1 + 30713 0.67 0.661507
Target:  5'- cGGCCGCgagCCGCCAuGCcCCgcccaccCGcCCAGg -3'
miRNA:   3'- -UCGGCGa--GGUGGU-CGaGGa------GCaGGUC- -5'
31076 3' -60.5 NC_006560.1 + 114574 0.67 0.661507
Target:  5'- cGCCGCgcgCCACC-GCUgCCUCGagcgCCu- -3'
miRNA:   3'- uCGGCGa--GGUGGuCGA-GGAGCa---GGuc -5'
31076 3' -60.5 NC_006560.1 + 43700 0.67 0.659514
Target:  5'- gGGCgCGCgCCACCAGCgagcgcagcgaCUCG-CCGGg -3'
miRNA:   3'- -UCG-GCGaGGUGGUCGag---------GAGCaGGUC- -5'
31076 3' -60.5 NC_006560.1 + 76890 0.67 0.651534
Target:  5'- uGGCCGUUgcCCGCCacgacGGcCUCCUCGcccgccUCCGGg -3'
miRNA:   3'- -UCGGCGA--GGUGG-----UC-GAGGAGC------AGGUC- -5'
31076 3' -60.5 NC_006560.1 + 23833 0.67 0.651534
Target:  5'- cGCCGCcgCCGCCGaccuGCUCUUcCGgaaCCAGa -3'
miRNA:   3'- uCGGCGa-GGUGGU----CGAGGA-GCa--GGUC- -5'
31076 3' -60.5 NC_006560.1 + 42877 0.67 0.651534
Target:  5'- cAGCCGCUCCgccuccGCCAGCcgCC-CGagcaucCCGGg -3'
miRNA:   3'- -UCGGCGAGG------UGGUCGa-GGaGCa-----GGUC- -5'
31076 3' -60.5 NC_006560.1 + 100680 0.67 0.651534
Target:  5'- cGCCGCcgCCACCGuCUCggaGUCCAGc -3'
miRNA:   3'- uCGGCGa-GGUGGUcGAGgagCAGGUC- -5'
31076 3' -60.5 NC_006560.1 + 118264 0.67 0.641547
Target:  5'- cGCCGCgCCGCCccggCCguggCGUCCGGg -3'
miRNA:   3'- uCGGCGaGGUGGucgaGGa---GCAGGUC- -5'
31076 3' -60.5 NC_006560.1 + 85435 0.67 0.641547
Target:  5'- cGCCGUgcgCCAcggcgugccCCGGgUCCUCGgCCAGc -3'
miRNA:   3'- uCGGCGa--GGU---------GGUCgAGGAGCaGGUC- -5'
31076 3' -60.5 NC_006560.1 + 69164 0.67 0.631553
Target:  5'- gGGCCcugaUCCagaacACCGGCUCCcCGUCCGu -3'
miRNA:   3'- -UCGGcg--AGG-----UGGUCGAGGaGCAGGUc -5'
31076 3' -60.5 NC_006560.1 + 9917 0.67 0.62156
Target:  5'- cGCCGCaCUGCCAggcGCUCC--GUCCAGa -3'
miRNA:   3'- uCGGCGaGGUGGU---CGAGGagCAGGUC- -5'
31076 3' -60.5 NC_006560.1 + 70053 0.67 0.611574
Target:  5'- cAGCUGCUCCGCgAGCUgCacgcCGUCguGc -3'
miRNA:   3'- -UCGGCGAGGUGgUCGAgGa---GCAGguC- -5'
31076 3' -60.5 NC_006560.1 + 42361 0.67 0.611574
Target:  5'- cAGUCGCUCgaacggaAUCGGCUCCcgcagggccaCGUCCAGg -3'
miRNA:   3'- -UCGGCGAGg------UGGUCGAGGa---------GCAGGUC- -5'
31076 3' -60.5 NC_006560.1 + 2931 0.67 0.611574
Target:  5'- gGGCgGgggagacgCCGCCgAGCUCCUCG-CCGGg -3'
miRNA:   3'- -UCGgCga------GGUGG-UCGAGGAGCaGGUC- -5'
31076 3' -60.5 NC_006560.1 + 148071 0.68 0.601602
Target:  5'- uAGCgggagaGCaUCAggAGCUCCUCGUCCAGg -3'
miRNA:   3'- -UCGg-----CGaGGUggUCGAGGAGCAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.