miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31076 5' -58.5 NC_006560.1 + 79251 0.66 0.792428
Target:  5'- gCCCc--GCCGCAGCCcgcgAGCCCgCGAAc -3'
miRNA:   3'- -GGGaccUGGCGUCGG----UCGGGaGUUUu -5'
31076 5' -58.5 NC_006560.1 + 1386 0.66 0.792428
Target:  5'- cCCCUccccCCGCGGCCcucgccccccgcGGCCCUCGc-- -3'
miRNA:   3'- -GGGAccu-GGCGUCGG------------UCGGGAGUuuu -5'
31076 5' -58.5 NC_006560.1 + 130145 0.66 0.792428
Target:  5'- aCCCUGua-CGCGGCCuggcuGCCCcCGAGGa -3'
miRNA:   3'- -GGGACcugGCGUCGGu----CGGGaGUUUU- -5'
31076 5' -58.5 NC_006560.1 + 74217 0.66 0.792428
Target:  5'- gCCUGG-CCG-AGCUcgagcgcuucgaGGCCCUCGAc- -3'
miRNA:   3'- gGGACCuGGCgUCGG------------UCGGGAGUUuu -5'
31076 5' -58.5 NC_006560.1 + 66005 0.66 0.792428
Target:  5'- aCCguggGGACCGCgGGUCGGCCgC-CAGGg -3'
miRNA:   3'- gGGa---CCUGGCG-UCGGUCGG-GaGUUUu -5'
31076 5' -58.5 NC_006560.1 + 29045 0.66 0.78697
Target:  5'- cCCCguauuUGGGCCGCgucuccggccggcggGGCCcGCCCgUCGGGGa -3'
miRNA:   3'- -GGG-----ACCUGGCG---------------UCGGuCGGG-AGUUUU- -5'
31076 5' -58.5 NC_006560.1 + 75072 0.66 0.783303
Target:  5'- gCgaGcGACC-CGGCUGGCCCUCGAc- -3'
miRNA:   3'- gGgaC-CUGGcGUCGGUCGGGAGUUuu -5'
31076 5' -58.5 NC_006560.1 + 24159 0.66 0.783303
Target:  5'- gCCC---GCCGCcGCC-GCCCUCGAGg -3'
miRNA:   3'- -GGGaccUGGCGuCGGuCGGGAGUUUu -5'
31076 5' -58.5 NC_006560.1 + 130586 0.66 0.783303
Target:  5'- gCCCUGGcggcgcacgucGCCGCgcGGCCGGCCgCgCGGc- -3'
miRNA:   3'- -GGGACC-----------UGGCG--UCGGUCGG-GaGUUuu -5'
31076 5' -58.5 NC_006560.1 + 34995 0.66 0.774042
Target:  5'- gCCUcgGGGCCGCgGGCCGGCCg------ -3'
miRNA:   3'- -GGGa-CCUGGCG-UCGGUCGGgaguuuu -5'
31076 5' -58.5 NC_006560.1 + 72903 0.66 0.774042
Target:  5'- gCgCUGGACgCGCugcgggagcGCCGGCCCcCGGAGc -3'
miRNA:   3'- -GgGACCUG-GCGu--------CGGUCGGGaGUUUU- -5'
31076 5' -58.5 NC_006560.1 + 20403 0.66 0.774042
Target:  5'- aCCCgGGACCGCuGGUCGGUCgccccccccgaCUCGAGc -3'
miRNA:   3'- -GGGaCCUGGCG-UCGGUCGG-----------GAGUUUu -5'
31076 5' -58.5 NC_006560.1 + 22972 0.66 0.774042
Target:  5'- -gCUGGgcgacGCCGCGcGCCAguacGCCCUCAu-- -3'
miRNA:   3'- ggGACC-----UGGCGU-CGGU----CGGGAGUuuu -5'
31076 5' -58.5 NC_006560.1 + 66150 0.66 0.774042
Target:  5'- cCCCcGcGGCgGCAGCUGGCUCUUGAu- -3'
miRNA:   3'- -GGGaC-CUGgCGUCGGUCGGGAGUUuu -5'
31076 5' -58.5 NC_006560.1 + 78389 0.66 0.774042
Target:  5'- aCCUGGugCugGCGGCCAcGCuCCUgGGGg -3'
miRNA:   3'- gGGACCugG--CGUCGGU-CG-GGAgUUUu -5'
31076 5' -58.5 NC_006560.1 + 112209 0.66 0.764656
Target:  5'- cCCCgcgGGccCCGCcGCCcGCCUUCGGGAg -3'
miRNA:   3'- -GGGa--CCu-GGCGuCGGuCGGGAGUUUU- -5'
31076 5' -58.5 NC_006560.1 + 142331 0.66 0.764656
Target:  5'- cCCCUGuGgCGCAGCCgGGCCC-CGc-- -3'
miRNA:   3'- -GGGACcUgGCGUCGG-UCGGGaGUuuu -5'
31076 5' -58.5 NC_006560.1 + 131166 0.66 0.764656
Target:  5'- gCUCUGGGCgGCGGCCGccgcgggggcGCCCg----- -3'
miRNA:   3'- -GGGACCUGgCGUCGGU----------CGGGaguuuu -5'
31076 5' -58.5 NC_006560.1 + 72103 0.66 0.755152
Target:  5'- aCCCcGGccggccucGCCGCGGCC-GCCCUgCGGc- -3'
miRNA:   3'- -GGGaCC--------UGGCGUCGGuCGGGA-GUUuu -5'
31076 5' -58.5 NC_006560.1 + 33309 0.66 0.755152
Target:  5'- gCCCgggGGGCC-C-GCCGGCCCgCGGAc -3'
miRNA:   3'- -GGGa--CCUGGcGuCGGUCGGGaGUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.