miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31076 5' -58.5 NC_006560.1 + 64514 1.07 0.001803
Target:  5'- uCCCUGGACCGCAGCCAGCCCUCAAAAg -3'
miRNA:   3'- -GGGACCUGGCGUCGGUCGGGAGUUUU- -5'
31076 5' -58.5 NC_006560.1 + 106772 0.76 0.269859
Target:  5'- gCCCUGGGCCGCAGCaccaccgcgAGaCCCUCu--- -3'
miRNA:   3'- -GGGACCUGGCGUCGg--------UC-GGGAGuuuu -5'
31076 5' -58.5 NC_006560.1 + 118896 0.75 0.310292
Target:  5'- gCCCUGGGCUGCGccauccGCgCGGCCCUCc--- -3'
miRNA:   3'- -GGGACCUGGCGU------CG-GUCGGGAGuuuu -5'
31076 5' -58.5 NC_006560.1 + 133145 0.72 0.430635
Target:  5'- gCCUGG-CCGCGGCagcgcgcgaagUAGUCCUCGGAGg -3'
miRNA:   3'- gGGACCuGGCGUCG-----------GUCGGGAGUUUU- -5'
31076 5' -58.5 NC_006560.1 + 39657 0.72 0.448643
Target:  5'- cUCCgcucGGGCCGCGGCCGcGCCC-CGGGc -3'
miRNA:   3'- -GGGa---CCUGGCGUCGGU-CGGGaGUUUu -5'
31076 5' -58.5 NC_006560.1 + 6409 0.72 0.448643
Target:  5'- gCCggcGGcGCCGCGGCCGGCCCgccgCAc-- -3'
miRNA:   3'- gGGa--CC-UGGCGUCGGUCGGGa---GUuuu -5'
31076 5' -58.5 NC_006560.1 + 57394 0.72 0.448643
Target:  5'- aCCaGGGCCGCGGCCAGCgCg----- -3'
miRNA:   3'- gGGaCCUGGCGUCGGUCGgGaguuuu -5'
31076 5' -58.5 NC_006560.1 + 78034 0.71 0.457801
Target:  5'- cCCCUGGcGCCGUGGCgcgCGGCCC-CGGAGc -3'
miRNA:   3'- -GGGACC-UGGCGUCG---GUCGGGaGUUUU- -5'
31076 5' -58.5 NC_006560.1 + 92066 0.71 0.476412
Target:  5'- cCCCcGGGCUcCAGCCAGCCCa----- -3'
miRNA:   3'- -GGGaCCUGGcGUCGGUCGGGaguuuu -5'
31076 5' -58.5 NC_006560.1 + 22820 0.71 0.476412
Target:  5'- gCCCUGGcCCGgGGCCgAGCCCcCGc-- -3'
miRNA:   3'- -GGGACCuGGCgUCGG-UCGGGaGUuuu -5'
31076 5' -58.5 NC_006560.1 + 113679 0.71 0.485857
Target:  5'- gCCC-GGACCGC-GCCccucguccccccGGCCCUCGGc- -3'
miRNA:   3'- -GGGaCCUGGCGuCGG------------UCGGGAGUUuu -5'
31076 5' -58.5 NC_006560.1 + 67854 0.71 0.485857
Target:  5'- gCCC-GGGCCGCGcGCC-GCCCcCAGAGg -3'
miRNA:   3'- -GGGaCCUGGCGU-CGGuCGGGaGUUUU- -5'
31076 5' -58.5 NC_006560.1 + 73491 0.71 0.485857
Target:  5'- cUCCUGGAgCGCucgcgGGCCGGCCCg----- -3'
miRNA:   3'- -GGGACCUgGCG-----UCGGUCGGGaguuuu -5'
31076 5' -58.5 NC_006560.1 + 27229 0.7 0.513731
Target:  5'- gCCgGGACCGCggggcggGGCCGGCCCcgccCAAAc -3'
miRNA:   3'- gGGaCCUGGCG-------UCGGUCGGGa---GUUUu -5'
31076 5' -58.5 NC_006560.1 + 75613 0.7 0.524476
Target:  5'- aCCCUGGcCCuggagGCGGCCuucGCCUUCAAc- -3'
miRNA:   3'- -GGGACCuGG-----CGUCGGu--CGGGAGUUuu -5'
31076 5' -58.5 NC_006560.1 + 13796 0.7 0.524476
Target:  5'- gCCCUcgguguucgGGGCCGC-GCCGGCUUUUAAAGg -3'
miRNA:   3'- -GGGA---------CCUGGCGuCGGUCGGGAGUUUU- -5'
31076 5' -58.5 NC_006560.1 + 60278 0.7 0.534318
Target:  5'- cCCCcGGGCCcgGCgccaAGCCcGCCCUCAAGc -3'
miRNA:   3'- -GGGaCCUGG--CG----UCGGuCGGGAGUUUu -5'
31076 5' -58.5 NC_006560.1 + 7418 0.7 0.544224
Target:  5'- cCCCgGGACCcCAGgCAGCCCcgCGGAc -3'
miRNA:   3'- -GGGaCCUGGcGUCgGUCGGGa-GUUUu -5'
31076 5' -58.5 NC_006560.1 + 36098 0.69 0.574272
Target:  5'- cCCCggcgGGGCCGCGGCgGGCaCCg----- -3'
miRNA:   3'- -GGGa---CCUGGCGUCGgUCG-GGaguuuu -5'
31076 5' -58.5 NC_006560.1 + 75007 0.69 0.574272
Target:  5'- gUCCUGGACC-CGGCguGCCCccUCGc-- -3'
miRNA:   3'- -GGGACCUGGcGUCGguCGGG--AGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.