miRNA display CGI


Results 21 - 40 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31079 3' -66 NC_006560.1 + 99908 0.66 0.489591
Target:  5'- cGGGGUucaUGUCGGccucgGGgcgcucGGgCGCGGCGg -3'
miRNA:   3'- -CCCCG---ACGGCCa----CCa-----CCgGCGCCGCg -5'
31079 3' -66 NC_006560.1 + 110548 0.66 0.489591
Target:  5'- aGGGGUg---GGUGG-GGCCaGCGGgGUa -3'
miRNA:   3'- -CCCCGacggCCACCaCCGG-CGCCgCG- -5'
31079 3' -66 NC_006560.1 + 56702 0.66 0.486922
Target:  5'- cGGGGg-GCCcgGGUGGUGGCgCGaaaccgucgcagacCGGaCGCc -3'
miRNA:   3'- -CCCCgaCGG--CCACCACCG-GC--------------GCC-GCG- -5'
31079 3' -66 NC_006560.1 + 131938 0.66 0.480722
Target:  5'- aGGaGGCgcucgacggGCUGGUccuGGaGGCCuucgcGCGGCGCc -3'
miRNA:   3'- -CC-CCGa--------CGGCCA---CCaCCGG-----CGCCGCG- -5'
31079 3' -66 NC_006560.1 + 31950 0.66 0.480722
Target:  5'- gGGGGCgGCCGGgcGG-GGgCGCGagacaagacGCGUc -3'
miRNA:   3'- -CCCCGaCGGCCa-CCaCCgGCGC---------CGCG- -5'
31079 3' -66 NC_006560.1 + 92355 0.66 0.480722
Target:  5'- aGGcGGCcGCCGccUGGUcucuGcGCgGCGGCGCg -3'
miRNA:   3'- -CC-CCGaCGGCc-ACCA----C-CGgCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 88764 0.66 0.475438
Target:  5'- gGGGGCggcgcggacccccgGCCGGccgggGGUccgaagaacccGGCCGCcgcccGCGCg -3'
miRNA:   3'- -CCCCGa-------------CGGCCa----CCA-----------CCGGCGc----CGCG- -5'
31079 3' -66 NC_006560.1 + 50188 0.66 0.471932
Target:  5'- cGGGCguccacgGCCccGGacgcccccgGGcGGCgGCGGCGCg -3'
miRNA:   3'- cCCCGa------CGG--CCa--------CCaCCGgCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 114345 0.66 0.471932
Target:  5'- gGGGGCgcgcgGCCGG-GGgcgcGuaCGCGG-GCg -3'
miRNA:   3'- -CCCCGa----CGGCCaCCa---CcgGCGCCgCG- -5'
31079 3' -66 NC_006560.1 + 123023 0.66 0.471932
Target:  5'- uGGGGCgcuacaucgGCCaGcUGGcgGGCCcgcGCGGCGa -3'
miRNA:   3'- -CCCCGa--------CGGcC-ACCa-CCGG---CGCCGCg -5'
31079 3' -66 NC_006560.1 + 27140 0.66 0.471932
Target:  5'- uGGGGCccgcaccgaGCCGcG-GGccgGGCCcucccgcgGCGGCGCg -3'
miRNA:   3'- -CCCCGa--------CGGC-CaCCa--CCGG--------CGCCGCG- -5'
31079 3' -66 NC_006560.1 + 116873 0.66 0.471932
Target:  5'- cGGGCUuggugaggacggGCCGGUcGUcGGCCGCcuCGCg -3'
miRNA:   3'- cCCCGA------------CGGCCAcCA-CCGGCGccGCG- -5'
31079 3' -66 NC_006560.1 + 142298 0.66 0.471932
Target:  5'- cGGGCgcgGCCGGcGccGGCCGCuGGaGCu -3'
miRNA:   3'- cCCCGa--CGGCCaCcaCCGGCG-CCgCG- -5'
31079 3' -66 NC_006560.1 + 24659 0.66 0.463224
Target:  5'- uGGGcCUGCUGGcGGccGCCGCcGGcCGCc -3'
miRNA:   3'- cCCC-GACGGCCaCCacCGGCG-CC-GCG- -5'
31079 3' -66 NC_006560.1 + 119610 0.66 0.463224
Target:  5'- cGGGGCccgaggGCCccgacGGcGGcggGGCCGC-GCGCa -3'
miRNA:   3'- -CCCCGa-----CGG-----CCaCCa--CCGGCGcCGCG- -5'
31079 3' -66 NC_006560.1 + 146510 0.66 0.463224
Target:  5'- gGGGaGCUgcGCCGGgcgGGccGGCgCGUcggggGGCGCg -3'
miRNA:   3'- -CCC-CGA--CGGCCa--CCa-CCG-GCG-----CCGCG- -5'
31079 3' -66 NC_006560.1 + 28078 0.66 0.463224
Target:  5'- uGGGGUgaGUCGGUGGUcccggGGuCCGUGG-GUg -3'
miRNA:   3'- -CCCCGa-CGGCCACCA-----CC-GGCGCCgCG- -5'
31079 3' -66 NC_006560.1 + 28128 0.66 0.463224
Target:  5'- uGGGGUgaGUCGGUGGUcccggGGuCCGUGG-GUg -3'
miRNA:   3'- -CCCCGa-CGGCCACCA-----CC-GGCGCCgCG- -5'
31079 3' -66 NC_006560.1 + 66730 0.66 0.463224
Target:  5'- cGGGCcaggGCCGGgaagucgcccgGGUGGCgGagGGCGa -3'
miRNA:   3'- cCCCGa---CGGCCa----------CCACCGgCg-CCGCg -5'
31079 3' -66 NC_006560.1 + 124254 0.66 0.463224
Target:  5'- cGGaCgucgaGCC-GUGGUGGuCCGCGGuCGCg -3'
miRNA:   3'- cCCcGa----CGGcCACCACC-GGCGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.