miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3108 3' -51.9 NC_001493.1 + 79202 0.66 0.984546
Target:  5'- gGCAgUGAGcGgGCUgCUCACGAACu -3'
miRNA:   3'- aUGUgGCUCuCaUGAgGAGUGCUUGc -5'
3108 3' -51.9 NC_001493.1 + 36228 0.66 0.980705
Target:  5'- cUGCG-CGGGGGUGCUCaguggggcggguugCGCGGACGa -3'
miRNA:   3'- -AUGUgGCUCUCAUGAGga------------GUGCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 131578 0.66 0.980485
Target:  5'- aACGCCGAGAuggGCgUCCaugaCugGAGCGa -3'
miRNA:   3'- aUGUGGCUCUca-UG-AGGa---GugCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 16023 0.66 0.980485
Target:  5'- aACGCCGAGAuggGCgUCCaugaCugGAGCGa -3'
miRNA:   3'- aUGUGGCUCUca-UG-AGGa---GugCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 60470 0.66 0.980485
Target:  5'- gUGCACgGGGGGUGucaUCCUCAC-AACc -3'
miRNA:   3'- -AUGUGgCUCUCAUg--AGGAGUGcUUGc -5'
3108 3' -51.9 NC_001493.1 + 7803 0.66 0.979813
Target:  5'- -uCACCGGGAG-ACUCgaucuucgggauaagCACGGACGg -3'
miRNA:   3'- auGUGGCUCUCaUGAGga-------------GUGCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 123357 0.66 0.979813
Target:  5'- -uCACCGGGAG-ACUCgaucuucgggauaagCACGGACGg -3'
miRNA:   3'- auGUGGCUCUCaUGAGga-------------GUGCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 45932 0.66 0.978178
Target:  5'- aGCucCCGGGuGaUGCUCUccgcaaUCACGAGCGg -3'
miRNA:   3'- aUGu-GGCUCuC-AUGAGG------AGUGCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 93537 0.66 0.978178
Target:  5'- gACGCCGuGAGcGCgggaUCCagACGGGCGg -3'
miRNA:   3'- aUGUGGCuCUCaUG----AGGagUGCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 95846 0.66 0.975676
Target:  5'- gACAUCGGGGuUGCUCgUgACGAGCc -3'
miRNA:   3'- aUGUGGCUCUcAUGAGgAgUGCUUGc -5'
3108 3' -51.9 NC_001493.1 + 30231 0.66 0.975676
Target:  5'- aACACCGAGGGgcucAUUCCccuguaCGCgGAGCGg -3'
miRNA:   3'- aUGUGGCUCUCa---UGAGGa-----GUG-CUUGC- -5'
3108 3' -51.9 NC_001493.1 + 130222 0.66 0.975676
Target:  5'- cUGCAccccCCGGGAGUgucccgagugcgGCUCCggggGCGGACGg -3'
miRNA:   3'- -AUGU----GGCUCUCA------------UGAGGag--UGCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 14668 0.66 0.975676
Target:  5'- cUGCAccccCCGGGAGUgucccgagugcgGCUCCggggGCGGACGg -3'
miRNA:   3'- -AUGU----GGCUCUCA------------UGAGGag--UGCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 12704 0.68 0.947748
Target:  5'- gAC-CCGGGAGU-CUCC-CACGGGgGa -3'
miRNA:   3'- aUGuGGCUCUCAuGAGGaGUGCUUgC- -5'
3108 3' -51.9 NC_001493.1 + 128258 0.68 0.947748
Target:  5'- gAC-CCGGGAGU-CUCC-CACGGGgGa -3'
miRNA:   3'- aUGuGGCUCUCAuGAGGaGUGCUUgC- -5'
3108 3' -51.9 NC_001493.1 + 132396 0.69 0.927963
Target:  5'- aUGC-CCGAGAGUccccagACgCCUCGCGAGUGa -3'
miRNA:   3'- -AUGuGGCUCUCA------UGaGGAGUGCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 56051 0.69 0.927963
Target:  5'- aUGCACgGGGaAGUACUgCUC-CGAGCc -3'
miRNA:   3'- -AUGUGgCUC-UCAUGAgGAGuGCUUGc -5'
3108 3' -51.9 NC_001493.1 + 16842 0.69 0.927963
Target:  5'- aUGC-CCGAGAGUccccagACgCCUCGCGAGUGa -3'
miRNA:   3'- -AUGuGGCUCUCA------UGaGGAGUGCUUGC- -5'
3108 3' -51.9 NC_001493.1 + 45724 0.69 0.904095
Target:  5'- -cCACCGAGAucgACUCC-CugGAGCu -3'
miRNA:   3'- auGUGGCUCUca-UGAGGaGugCUUGc -5'
3108 3' -51.9 NC_001493.1 + 16666 0.7 0.897497
Target:  5'- -uCACCGGGGGUugUgC-CACGggUGg -3'
miRNA:   3'- auGUGGCUCUCAugAgGaGUGCuuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.