miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31080 3' -56.2 NC_006560.1 + 23551 0.66 0.882674
Target:  5'- cGUCGAGGGCUucggCggcGAccucGCCGCCGUg -3'
miRNA:   3'- -CAGCUUCCGGca--Gaa-CU----UGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 115768 0.66 0.882674
Target:  5'- -cCGAGGcGCCc----GGGCCGCCGCAg -3'
miRNA:   3'- caGCUUC-CGGcagaaCUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 106577 0.66 0.875564
Target:  5'- cUCGggGGCCGgggCcUG-GCCGCCcCGg -3'
miRNA:   3'- cAGCuuCCGGCa--GaACuUGGCGGcGU- -5'
31080 3' -56.2 NC_006560.1 + 102069 0.66 0.875564
Target:  5'- cUCGAGGGCCGagUaGuGCCGCUGg- -3'
miRNA:   3'- cAGCUUCCGGCagAaCuUGGCGGCgu -5'
31080 3' -56.2 NC_006560.1 + 58570 0.66 0.873388
Target:  5'- cGUCGAGGGCUGUg--GAgaacGCCcggucuagguucguGCCGCAg -3'
miRNA:   3'- -CAGCUUCCGGCAgaaCU----UGG--------------CGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 23763 0.67 0.868235
Target:  5'- -cCGuGGGCCucGUCgccgGcGCCGCCGCGc -3'
miRNA:   3'- caGCuUCCGG--CAGaa--CuUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 6097 0.67 0.868235
Target:  5'- cGUCGAGGgcGCCG-Cgcc-GCCGCCGCc -3'
miRNA:   3'- -CAGCUUC--CGGCaGaacuUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 1007 0.67 0.860694
Target:  5'- -cCGggGcGCCGUCUccgccCCGCCGUc -3'
miRNA:   3'- caGCuuC-CGGCAGAacuu-GGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 118046 0.67 0.852946
Target:  5'- -gCGggGGCgGgcccgGcGCCGCCGCGg -3'
miRNA:   3'- caGCuuCCGgCagaa-CuUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 50846 0.67 0.852946
Target:  5'- -aCGccGAGGCCG----GAGCCGCCGCc -3'
miRNA:   3'- caGC--UUCCGGCagaaCUUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 101757 0.67 0.852946
Target:  5'- cGUCGgcGGCCGcgUCgcgGGGCaCGUCGCc -3'
miRNA:   3'- -CAGCuuCCGGC--AGaa-CUUG-GCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 116808 0.67 0.852946
Target:  5'- cUCGggGGCCa---UGAgGCCGCCGUu -3'
miRNA:   3'- cAGCuuCCGGcagaACU-UGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 107828 0.67 0.850582
Target:  5'- gGUCGAAGGCCGacaggcgguucacgUCUUccACgGCCaGCAc -3'
miRNA:   3'- -CAGCUUCCGGC--------------AGAAcuUGgCGG-CGU- -5'
31080 3' -56.2 NC_006560.1 + 31738 0.67 0.844998
Target:  5'- uUCGAgcaGGGCgCG-CUgcUGGGCgGCCGCAg -3'
miRNA:   3'- cAGCU---UCCG-GCaGA--ACUUGgCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 27666 0.67 0.844998
Target:  5'- -gCGGAGGUCGUCcucgcCCGCCGUc -3'
miRNA:   3'- caGCUUCCGGCAGaacuuGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 38920 0.67 0.828528
Target:  5'- cGUCGGuacAGGCCGgguccgUGcGCCGCCaGCGu -3'
miRNA:   3'- -CAGCU---UCCGGCaga---ACuUGGCGG-CGU- -5'
31080 3' -56.2 NC_006560.1 + 61618 0.67 0.828528
Target:  5'- cUCGAuGGCgG-CcaGGGCCGCCGCGu -3'
miRNA:   3'- cAGCUuCCGgCaGaaCUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 69996 0.67 0.828528
Target:  5'- -cCGggGGCCGaC----GCCGCCGCc -3'
miRNA:   3'- caGCuuCCGGCaGaacuUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 15271 0.67 0.828528
Target:  5'- -cCGggGGCgCgGUCgcggGAGCCGgCGCGg -3'
miRNA:   3'- caGCuuCCG-G-CAGaa--CUUGGCgGCGU- -5'
31080 3' -56.2 NC_006560.1 + 125607 0.68 0.820021
Target:  5'- cGUCGAcgccGCgGUCUacgaccUGAuCCGCCGCAa -3'
miRNA:   3'- -CAGCUuc--CGgCAGA------ACUuGGCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.