miRNA display CGI


Results 21 - 40 of 547 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31080 5' -65.6 NC_006560.1 + 83515 0.66 0.49333
Target:  5'- --gGgGGCGGGcCGCgGGCGcGCGCCCGc -3'
miRNA:   3'- aggCgCCGCUCcGUG-CCGU-CGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 93659 0.66 0.49333
Target:  5'- gCCGCGGCuucggcuccGGCGuCGGCGGCGgaCGa -3'
miRNA:   3'- aGGCGCCGcu-------CCGU-GCCGUCGCggGC- -5'
31080 5' -65.6 NC_006560.1 + 99634 0.66 0.49333
Target:  5'- --nGCGGCGAuGGCgccgaccagcGCGGCGaucuGCGCCUc -3'
miRNA:   3'- aggCGCCGCU-CCG----------UGCCGU----CGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 113769 0.66 0.49333
Target:  5'- cCCGCGGCGAGaaCACGcucacGUAcGCGCUCa -3'
miRNA:   3'- aGGCGCCGCUCc-GUGC-----CGU-CGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 32589 0.66 0.49333
Target:  5'- cCCGCaGGgacaCGGGGgGCGGgGGCuGCCCc -3'
miRNA:   3'- aGGCG-CC----GCUCCgUGCCgUCG-CGGGc -5'
31080 5' -65.6 NC_006560.1 + 51973 0.66 0.49333
Target:  5'- gUCCG-GGCGGcGgGCGGCGG-GCCUGc -3'
miRNA:   3'- -AGGCgCCGCUcCgUGCCGUCgCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 64402 0.66 0.492432
Target:  5'- cCCGCGcuccaUGAGGCGCGGCGucggaccGUGCuCCa -3'
miRNA:   3'- aGGCGCc----GCUCCGUGCCGU-------CGCG-GGc -5'
31080 5' -65.6 NC_006560.1 + 76122 0.66 0.484382
Target:  5'- gCCGCGuGCGucgGGGCGCuGgAGCGCgUGg -3'
miRNA:   3'- aGGCGC-CGC---UCCGUGcCgUCGCGgGC- -5'
31080 5' -65.6 NC_006560.1 + 58669 0.66 0.484382
Target:  5'- gCCGCaucugggagucGGCGGuGCuCGGCgcGGCGCCCu -3'
miRNA:   3'- aGGCG-----------CCGCUcCGuGCCG--UCGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 14372 0.66 0.484382
Target:  5'- -gUGgGGCGAGGCGaGGCGGgGCgacgaCCGa -3'
miRNA:   3'- agGCgCCGCUCCGUgCCGUCgCG-----GGC- -5'
31080 5' -65.6 NC_006560.1 + 919 0.66 0.484382
Target:  5'- cCCgGCGGUgGAGGCcuaggggagccCGGCAGC-CCCGc -3'
miRNA:   3'- aGG-CGCCG-CUCCGu----------GCCGUCGcGGGC- -5'
31080 5' -65.6 NC_006560.1 + 25979 0.66 0.484382
Target:  5'- gCCGCGG-GGGGCGagGGCcgcggggggaggGGCGCCg- -3'
miRNA:   3'- aGGCGCCgCUCCGUg-CCG------------UCGCGGgc -5'
31080 5' -65.6 NC_006560.1 + 78343 0.66 0.484382
Target:  5'- gUCCGCGGCGGcccGCcCGaccccGCGGCGCgCGu -3'
miRNA:   3'- -AGGCGCCGCUc--CGuGC-----CGUCGCGgGC- -5'
31080 5' -65.6 NC_006560.1 + 83676 0.66 0.484382
Target:  5'- -gCGCGGCGcgGGGCuccGgGGCcGCGCCgCGc -3'
miRNA:   3'- agGCGCCGC--UCCG---UgCCGuCGCGG-GC- -5'
31080 5' -65.6 NC_006560.1 + 121255 0.66 0.484382
Target:  5'- -gCGUGGCGAcgucgaccuuGGCGCGcuucuuCAGCGgCCCGg -3'
miRNA:   3'- agGCGCCGCU----------CCGUGCc-----GUCGC-GGGC- -5'
31080 5' -65.6 NC_006560.1 + 37572 0.66 0.484382
Target:  5'- aUCGCaGGUGcuGCAUGGCcgccgcGGUGCCCGu -3'
miRNA:   3'- aGGCG-CCGCucCGUGCCG------UCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 50964 0.66 0.484382
Target:  5'- cUCGCGGCGccccagaccGGGCccgaGGCGGcCGCCUu -3'
miRNA:   3'- aGGCGCCGC---------UCCGug--CCGUC-GCGGGc -5'
31080 5' -65.6 NC_006560.1 + 105262 0.66 0.484382
Target:  5'- cUCCGcCGGCGGaGCugaaccugACGGCGaccaccGCGCCCc -3'
miRNA:   3'- -AGGC-GCCGCUcCG--------UGCCGU------CGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 129868 0.66 0.484382
Target:  5'- cUUCGCGG--AGGCGCGcuuccggcuGCGcGCGCCCGc -3'
miRNA:   3'- -AGGCGCCgcUCCGUGC---------CGU-CGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 23973 0.66 0.483492
Target:  5'- cCCGcCGGCGcgcaagaAGaGC-CGGCccGCGCCCGc -3'
miRNA:   3'- aGGC-GCCGC-------UC-CGuGCCGu-CGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.