miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31084 3' -61.5 NC_006560.1 + 137167 0.66 0.652214
Target:  5'- -cGG-GGCgGAgGGCGCGgaggGCGCgGAg -3'
miRNA:   3'- uaCCuCCGgCUgCUGCGCa---CGCGgUU- -5'
31084 3' -61.5 NC_006560.1 + 132110 0.66 0.652214
Target:  5'- -cGGcGGGCCgGACGGCGgGUcggucgccGUGCCGAu -3'
miRNA:   3'- uaCC-UCCGG-CUGCUGCgCA--------CGCGGUU- -5'
31084 3' -61.5 NC_006560.1 + 100833 0.66 0.652214
Target:  5'- -cGGGGGCCGGCGGaggggagggGCG-GUGUCGGg -3'
miRNA:   3'- uaCCUCCGGCUGCUg--------CGCaCGCGGUU- -5'
31084 3' -61.5 NC_006560.1 + 76218 0.66 0.652214
Target:  5'- -gGcGAGGCCaAgGACGCGcuggugcGCGCCAAg -3'
miRNA:   3'- uaC-CUCCGGcUgCUGCGCa------CGCGGUU- -5'
31084 3' -61.5 NC_006560.1 + 11891 0.66 0.652214
Target:  5'- -cGGgcgacguacAGGCCGACGACGgCGUcCGCgAAg -3'
miRNA:   3'- uaCC---------UCCGGCUGCUGC-GCAcGCGgUU- -5'
31084 3' -61.5 NC_006560.1 + 525 0.66 0.642193
Target:  5'- -cGGGGGgCGGCGGC-CGgccGCGCCc- -3'
miRNA:   3'- uaCCUCCgGCUGCUGcGCa--CGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 63094 0.66 0.642193
Target:  5'- aGUGGAagcGGCCGGCGcgaaacACGC-UGCGCUu- -3'
miRNA:   3'- -UACCU---CCGGCUGC------UGCGcACGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 135432 0.66 0.642193
Target:  5'- -cGaGAGcGCCGGaGACGCGaGCGCCu- -3'
miRNA:   3'- uaC-CUC-CGGCUgCUGCGCaCGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 5681 0.66 0.632164
Target:  5'- -gGGGcGGCCGGCGGCGCcgccCGUCGAg -3'
miRNA:   3'- uaCCU-CCGGCUGCUGCGcac-GCGGUU- -5'
31084 3' -61.5 NC_006560.1 + 70491 0.66 0.632164
Target:  5'- cUGGGGGUCuGCGACGCGcugGCGaCgCAGg -3'
miRNA:   3'- uACCUCCGGcUGCUGCGCa--CGC-G-GUU- -5'
31084 3' -61.5 NC_006560.1 + 76731 0.66 0.632164
Target:  5'- cUGGAGGCgGcgcGCGAgcaGCuGUGCGCCc- -3'
miRNA:   3'- uACCUCCGgC---UGCUg--CG-CACGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 95319 0.66 0.632164
Target:  5'- -gGGAcGGUCGugGAcaacCGCGccGCGCCGGg -3'
miRNA:   3'- uaCCU-CCGGCugCU----GCGCa-CGCGGUU- -5'
31084 3' -61.5 NC_006560.1 + 4157 0.66 0.632164
Target:  5'- cAUGGccacGG-CGGCGGCgGCGUGgGCCAGg -3'
miRNA:   3'- -UACCu---CCgGCUGCUG-CGCACgCGGUU- -5'
31084 3' -61.5 NC_006560.1 + 63599 0.66 0.632164
Target:  5'- gGUGGuGGCCG-CGGCGCGcacgaugGCauagGCCAc -3'
miRNA:   3'- -UACCuCCGGCuGCUGCGCa------CG----CGGUu -5'
31084 3' -61.5 NC_006560.1 + 93018 0.66 0.632164
Target:  5'- -cGG-GGCCGAgGACGaCGacGCGCCc- -3'
miRNA:   3'- uaCCuCCGGCUgCUGC-GCa-CGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 130516 0.66 0.632164
Target:  5'- -cGGcGGCCGGCcgGugGCGccgcgcgGCGCCGc -3'
miRNA:   3'- uaCCuCCGGCUG--CugCGCa------CGCGGUu -5'
31084 3' -61.5 NC_006560.1 + 147106 0.66 0.632164
Target:  5'- -gGGGGGCgGgcgcGCGACGCGggccgcgGCGCgAGg -3'
miRNA:   3'- uaCCUCCGgC----UGCUGCGCa------CGCGgUU- -5'
31084 3' -61.5 NC_006560.1 + 126664 0.66 0.632164
Target:  5'- --cGAcGCCGGCGGcCGCGaugGCGCCGAc -3'
miRNA:   3'- uacCUcCGGCUGCU-GCGCa--CGCGGUU- -5'
31084 3' -61.5 NC_006560.1 + 75127 0.66 0.629155
Target:  5'- cUGGGGGCCGcggccgccgaccugGCGGCGgCGgUGCGgCGGg -3'
miRNA:   3'- uACCUCCGGC--------------UGCUGC-GC-ACGCgGUU- -5'
31084 3' -61.5 NC_006560.1 + 72354 0.66 0.622136
Target:  5'- gGUGuGGGGCgCGGCccuCGCGgggGCGCCGc -3'
miRNA:   3'- -UAC-CUCCG-GCUGcu-GCGCa--CGCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.