miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31084 3' -61.5 NC_006560.1 + 118319 0.66 0.622136
Target:  5'- -aGGcGGCCGcCGugGCG-GCgGCCGg -3'
miRNA:   3'- uaCCuCCGGCuGCugCGCaCG-CGGUu -5'
31084 3' -61.5 NC_006560.1 + 27583 0.66 0.622136
Target:  5'- --uGAGGCCGcCGGCGCGcggguggGCGCUc- -3'
miRNA:   3'- uacCUCCGGCuGCUGCGCa------CGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 34638 0.66 0.622136
Target:  5'- -cGGAGGucgcaCCGGgGACGCGcgGCgGCCGGg -3'
miRNA:   3'- uaCCUCC-----GGCUgCUGCGCa-CG-CGGUU- -5'
31084 3' -61.5 NC_006560.1 + 72354 0.66 0.622136
Target:  5'- gGUGuGGGGCgCGGCccuCGCGgggGCGCCGc -3'
miRNA:   3'- -UAC-CUCCG-GCUGcu-GCGCa--CGCGGUu -5'
31084 3' -61.5 NC_006560.1 + 33852 0.66 0.622136
Target:  5'- cGUGGGGGCgCG-CG-CGCGUGUGUg-- -3'
miRNA:   3'- -UACCUCCG-GCuGCuGCGCACGCGguu -5'
31084 3' -61.5 NC_006560.1 + 5746 0.66 0.619128
Target:  5'- -aGGAucgcauuagcaugcGGCCGGCGGCGCc-GCGCgCAGg -3'
miRNA:   3'- uaCCU--------------CCGGCUGCUGCGcaCGCG-GUU- -5'
31084 3' -61.5 NC_006560.1 + 71644 0.66 0.616121
Target:  5'- gGUGGAGGgcggggCGugGACGCGggccucggccggcgGCGCCc- -3'
miRNA:   3'- -UACCUCCg-----GCugCUGCGCa-------------CGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 80813 0.66 0.612114
Target:  5'- -aGGGGGCUG-CGGgGCGgggcGCGCCc- -3'
miRNA:   3'- uaCCUCCGGCuGCUgCGCa---CGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 1885 0.66 0.612114
Target:  5'- -cGGGGGUCG-CGG-GCGgcgGCGCCGg -3'
miRNA:   3'- uaCCUCCGGCuGCUgCGCa--CGCGGUu -5'
31084 3' -61.5 NC_006560.1 + 20961 0.66 0.612114
Target:  5'- -cGGcGGGCCGGC--CGCG-GCGCCGc -3'
miRNA:   3'- uaCC-UCCGGCUGcuGCGCaCGCGGUu -5'
31084 3' -61.5 NC_006560.1 + 69997 0.66 0.612114
Target:  5'- -cGGGGGCCGACGcCGCc-GCcCCAc -3'
miRNA:   3'- uaCCUCCGGCUGCuGCGcaCGcGGUu -5'
31084 3' -61.5 NC_006560.1 + 116128 0.66 0.612114
Target:  5'- gAUGGGGGCgaacgCGugGuGCGCGUGggggguggcCGCCAGg -3'
miRNA:   3'- -UACCUCCG-----GCugC-UGCGCAC---------GCGGUU- -5'
31084 3' -61.5 NC_006560.1 + 94445 0.66 0.612114
Target:  5'- -cGGAGGCgGcGCgGGCGCGcGCGCUg- -3'
miRNA:   3'- uaCCUCCGgC-UG-CUGCGCaCGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 131848 0.66 0.612114
Target:  5'- -cGGcGGCggCGGCGACGCGgcgcGCGCUg- -3'
miRNA:   3'- uaCCuCCG--GCUGCUGCGCa---CGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 5104 0.66 0.612114
Target:  5'- -cGG-GGUCGGCGgggGCGCG-GCGUCGAu -3'
miRNA:   3'- uaCCuCCGGCUGC---UGCGCaCGCGGUU- -5'
31084 3' -61.5 NC_006560.1 + 22934 0.66 0.606108
Target:  5'- --cGAGGCCGcCGGCGCGcccgccccguguggGCGCCc- -3'
miRNA:   3'- uacCUCCGGCuGCUGCGCa-------------CGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 77168 0.66 0.606108
Target:  5'- cUGGAGGCUcgcgcgcagagcccgGACGAgCGcCGcGCGCCGGa -3'
miRNA:   3'- uACCUCCGG---------------CUGCU-GC-GCaCGCGGUU- -5'
31084 3' -61.5 NC_006560.1 + 43303 0.66 0.602107
Target:  5'- -cGGAcGUCGGCGGCGa-UGCGCCGc -3'
miRNA:   3'- uaCCUcCGGCUGCUGCgcACGCGGUu -5'
31084 3' -61.5 NC_006560.1 + 30562 0.66 0.602107
Target:  5'- -aGGcGGcGCCG-CGGCGCGcGCGCCu- -3'
miRNA:   3'- uaCC-UC-CGGCuGCUGCGCaCGCGGuu -5'
31084 3' -61.5 NC_006560.1 + 9544 0.66 0.602107
Target:  5'- -gGaGAGGCCGGCGGCGgccagccccaGggccGCGCCGAa -3'
miRNA:   3'- uaC-CUCCGGCUGCUGCg---------Ca---CGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.