miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31084 5' -54.9 NC_006560.1 + 146598 0.66 0.946432
Target:  5'- -cCCGAgGCCGggCGCUUGCGggCCugGg -3'
miRNA:   3'- guGGUUgUGGCa-GCGGAUGCa-GGugU- -5'
31084 5' -54.9 NC_006560.1 + 15686 0.66 0.946432
Target:  5'- gGCCGGgACCGagCGCCacagggGCG-CCGCAg -3'
miRNA:   3'- gUGGUUgUGGCa-GCGGa-----UGCaGGUGU- -5'
31084 5' -54.9 NC_006560.1 + 48057 0.66 0.946432
Target:  5'- aCAUgGACACCGauggggccUCGCCcccccgGCGUCC-CAc -3'
miRNA:   3'- -GUGgUUGUGGC--------AGCGGa-----UGCAGGuGU- -5'
31084 5' -54.9 NC_006560.1 + 89827 0.66 0.946432
Target:  5'- aCGCCGucccacuucGCcCCGUCgGUCUACGucuUCCACGg -3'
miRNA:   3'- -GUGGU---------UGuGGCAG-CGGAUGC---AGGUGU- -5'
31084 5' -54.9 NC_006560.1 + 143879 0.66 0.946432
Target:  5'- gGCCGACccccGCCGaccccCGCCcccCGUCCGCGc -3'
miRNA:   3'- gUGGUUG----UGGCa----GCGGau-GCAGGUGU- -5'
31084 5' -54.9 NC_006560.1 + 30862 0.66 0.946432
Target:  5'- cCGCCccGCGCCGcCGCagcACGcCCACAc -3'
miRNA:   3'- -GUGGu-UGUGGCaGCGga-UGCaGGUGU- -5'
31084 5' -54.9 NC_006560.1 + 28726 0.66 0.941932
Target:  5'- uGCCGGCGCCGccgguuggucgCGCCaccGCGUCC-CGc -3'
miRNA:   3'- gUGGUUGUGGCa----------GCGGa--UGCAGGuGU- -5'
31084 5' -54.9 NC_006560.1 + 128947 0.66 0.941932
Target:  5'- uGCUGACGCUGaa--CUGCGUCCGCGu -3'
miRNA:   3'- gUGGUUGUGGCagcgGAUGCAGGUGU- -5'
31084 5' -54.9 NC_006560.1 + 4457 0.66 0.941932
Target:  5'- gGCCucguAGCGCCGgcgCGCCUcCG-CCACc -3'
miRNA:   3'- gUGG----UUGUGGCa--GCGGAuGCaGGUGu -5'
31084 5' -54.9 NC_006560.1 + 36882 0.66 0.941932
Target:  5'- -cCCAGCGCCG-CGCCgccagACGcUCC-CGg -3'
miRNA:   3'- guGGUUGUGGCaGCGGa----UGC-AGGuGU- -5'
31084 5' -54.9 NC_006560.1 + 39604 0.66 0.941932
Target:  5'- gCGCCGGC-CCGcggagCGCCgcggcggGCGUCgGCGu -3'
miRNA:   3'- -GUGGUUGuGGCa----GCGGa------UGCAGgUGU- -5'
31084 5' -54.9 NC_006560.1 + 56616 0.66 0.941932
Target:  5'- uCGCCGGC-CCG-CGCgUcguCGUCCACc -3'
miRNA:   3'- -GUGGUUGuGGCaGCGgAu--GCAGGUGu -5'
31084 5' -54.9 NC_006560.1 + 130590 0.66 0.941932
Target:  5'- uGgCGGCGCaCGUCGCCgcGCGgccggCCGCGc -3'
miRNA:   3'- gUgGUUGUG-GCAGCGGa-UGCa----GGUGU- -5'
31084 5' -54.9 NC_006560.1 + 22063 0.66 0.941932
Target:  5'- gGCCGcCGCCGUCGCaCgcgGCGgCCgACGa -3'
miRNA:   3'- gUGGUuGUGGCAGCG-Ga--UGCaGG-UGU- -5'
31084 5' -54.9 NC_006560.1 + 90330 0.66 0.941932
Target:  5'- gGCCcgcaacgugGACGCCGUCGCgCggGCGgCCGCc -3'
miRNA:   3'- gUGG---------UUGUGGCAGCG-Ga-UGCaGGUGu -5'
31084 5' -54.9 NC_006560.1 + 114558 0.66 0.941932
Target:  5'- uCACCGcCGCCGacaUCGCCgcGCG-CCACc -3'
miRNA:   3'- -GUGGUuGUGGC---AGCGGa-UGCaGGUGu -5'
31084 5' -54.9 NC_006560.1 + 120025 0.66 0.941932
Target:  5'- -cCCGGCGCCGagCGCCUcgagACGacgCCGCu -3'
miRNA:   3'- guGGUUGUGGCa-GCGGA----UGCa--GGUGu -5'
31084 5' -54.9 NC_006560.1 + 109057 0.66 0.940536
Target:  5'- cCACCGGCcgcacgucgcucagGCCG-CGCCUGCGgagCuCGCu -3'
miRNA:   3'- -GUGGUUG--------------UGGCaGCGGAUGCa--G-GUGu -5'
31084 5' -54.9 NC_006560.1 + 22264 0.66 0.939118
Target:  5'- uCAUCGACGCCG-CGCCcccgccgaccccggGCGgcgcgCCGCAc -3'
miRNA:   3'- -GUGGUUGUGGCaGCGGa-------------UGCa----GGUGU- -5'
31084 5' -54.9 NC_006560.1 + 72805 0.66 0.937195
Target:  5'- uCGCCGGCcCCGcCGCCggaACGgcagcCCGCGg -3'
miRNA:   3'- -GUGGUUGuGGCaGCGGa--UGCa----GGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.