miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31085 3' -47.9 NC_006560.1 + 80261 0.66 0.999838
Target:  5'- uCCUcGUGG-GCGUcGUcccuCGCGCUGGa -3'
miRNA:   3'- -GGA-CACCuUGCAuUAcau-GUGCGACC- -5'
31085 3' -47.9 NC_006560.1 + 48231 0.66 0.999792
Target:  5'- aCCUGggcuucgGGGACGggcccgcgcUGUGCACgauccuagacaGCUGGa -3'
miRNA:   3'- -GGACa------CCUUGCauu------ACAUGUG-----------CGACC- -5'
31085 3' -47.9 NC_006560.1 + 77325 0.66 0.999665
Target:  5'- aCCUGgccccggacGGAACGccgcugcaGUACGCGCUGu -3'
miRNA:   3'- -GGACa--------CCUUGCauua----CAUGUGCGACc -5'
31085 3' -47.9 NC_006560.1 + 87867 0.66 0.999665
Target:  5'- gCCgcgGUGGGGCGcgGGUGgggggGCGCGCc-- -3'
miRNA:   3'- -GGa--CACCUUGCa-UUACa----UGUGCGacc -5'
31085 3' -47.9 NC_006560.1 + 136177 0.68 0.998797
Target:  5'- aCCUGcUGacGGcCGUGGUGUAC-UGCUGGu -3'
miRNA:   3'- -GGAC-AC--CUuGCAUUACAUGuGCGACC- -5'
31085 3' -47.9 NC_006560.1 + 76662 0.68 0.998797
Target:  5'- gCCgaGUGGGACGaGGUGUGggUGCGCUucGGg -3'
miRNA:   3'- -GGa-CACCUUGCaUUACAU--GUGCGA--CC- -5'
31085 3' -47.9 NC_006560.1 + 106853 0.68 0.998242
Target:  5'- aUCUGgccGAGCGcucguucgUGAUGgACACGCUGGc -3'
miRNA:   3'- -GGACac-CUUGC--------AUUACaUGUGCGACC- -5'
31085 3' -47.9 NC_006560.1 + 45257 0.68 0.997656
Target:  5'- gUCUGUGGcGCGUGcgggggaggugccccGgggGUACGCGCggaGGa -3'
miRNA:   3'- -GGACACCuUGCAU---------------Ua--CAUGUGCGa--CC- -5'
31085 3' -47.9 NC_006560.1 + 34279 0.68 0.997486
Target:  5'- aCCgc-GGGACGggGGUGUGCGCGcCUGu -3'
miRNA:   3'- -GGacaCCUUGCa-UUACAUGUGC-GACc -5'
31085 3' -47.9 NC_006560.1 + 18195 0.68 0.997486
Target:  5'- gUUGUGGucACgGUGAUG-ACGCuGCUGGa -3'
miRNA:   3'- gGACACCu-UG-CAUUACaUGUG-CGACC- -5'
31085 3' -47.9 NC_006560.1 + 50540 0.68 0.997486
Target:  5'- --cGUGGGACGagucgGUGCACGCcgccaUGGc -3'
miRNA:   3'- ggaCACCUUGCauua-CAUGUGCG-----ACC- -5'
31085 3' -47.9 NC_006560.1 + 73840 0.69 0.995859
Target:  5'- uCCUGcGGGGCGc-GUGUACAgcgccaaggcgcUGCUGGc -3'
miRNA:   3'- -GGACaCCUUGCauUACAUGU------------GCGACC- -5'
31085 3' -47.9 NC_006560.1 + 131372 0.69 0.995156
Target:  5'- cCCUGgcgcggGGGGCGcGGUGcugGCggGCGCUGGc -3'
miRNA:   3'- -GGACa-----CCUUGCaUUACa--UG--UGCGACC- -5'
31085 3' -47.9 NC_006560.1 + 130383 0.76 0.885596
Target:  5'- cCCUGUGGcGCGcgcUGUacgcgaGCGCGCUGGc -3'
miRNA:   3'- -GGACACCuUGCauuACA------UGUGCGACC- -5'
31085 3' -47.9 NC_006560.1 + 59912 1.14 0.010058
Target:  5'- aCCUGUGGAACGUAAUGUACACGCUGGu -3'
miRNA:   3'- -GGACACCUUGCAUUACAUGUGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.