miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31085 5' -58.6 NC_006560.1 + 142750 0.66 0.8126
Target:  5'- -cCCGGCGCCcggGCCCCGgGggcGCGGg -3'
miRNA:   3'- auGGUCGCGGcgaUGGGGUgCa--UGCU- -5'
31085 5' -58.6 NC_006560.1 + 11133 0.66 0.8126
Target:  5'- aGCgGGCGUCGaggGCCCCgggGCGgcgcgGCGAg -3'
miRNA:   3'- aUGgUCGCGGCga-UGGGG---UGCa----UGCU- -5'
31085 5' -58.6 NC_006560.1 + 103091 0.66 0.8126
Target:  5'- gACCGGUcCCGC--CCCCGCGgacccgGCGGc -3'
miRNA:   3'- aUGGUCGcGGCGauGGGGUGCa-----UGCU- -5'
31085 5' -58.6 NC_006560.1 + 138507 0.66 0.8126
Target:  5'- gGCCggGGCGCCGCcccgucugcCCCCACcccccgGCGAc -3'
miRNA:   3'- aUGG--UCGCGGCGau-------GGGGUGca----UGCU- -5'
31085 5' -58.6 NC_006560.1 + 149992 0.66 0.8126
Target:  5'- cUACCGGgGCCGCgcucgggaCCGCGgGCGGc -3'
miRNA:   3'- -AUGGUCgCGGCGaugg----GGUGCaUGCU- -5'
31085 5' -58.6 NC_006560.1 + 17967 0.66 0.8126
Target:  5'- cGgCGGCGcCCGggGCCCCACccgcGCGAg -3'
miRNA:   3'- aUgGUCGC-GGCgaUGGGGUGca--UGCU- -5'
31085 5' -58.6 NC_006560.1 + 144206 0.66 0.8126
Target:  5'- gGCCGGCGcCCGCcuCCCUGCcgGCGGc -3'
miRNA:   3'- aUGGUCGC-GGCGauGGGGUGcaUGCU- -5'
31085 5' -58.6 NC_006560.1 + 150058 0.66 0.8126
Target:  5'- --gCGGCgGCCGC-GCCCCGCGccCGGc -3'
miRNA:   3'- augGUCG-CGGCGaUGGGGUGCauGCU- -5'
31085 5' -58.6 NC_006560.1 + 52829 0.66 0.8126
Target:  5'- -cCCAGCGCCGacacgGCgCUGCGgcucgGCGAg -3'
miRNA:   3'- auGGUCGCGGCga---UGgGGUGCa----UGCU- -5'
31085 5' -58.6 NC_006560.1 + 66480 0.66 0.811736
Target:  5'- gGCCAGCGCguccaggCGCgcCCCCGCccGCGc -3'
miRNA:   3'- aUGGUCGCG-------GCGauGGGGUGcaUGCu -5'
31085 5' -58.6 NC_006560.1 + 70818 0.66 0.810004
Target:  5'- gACCAgcGCGCCGCggcgguccgggagguCCUCGCGgacgugACGAg -3'
miRNA:   3'- aUGGU--CGCGGCGau-------------GGGGUGCa-----UGCU- -5'
31085 5' -58.6 NC_006560.1 + 66911 0.66 0.807395
Target:  5'- gUGCuCGGCGCCGCcguCCgCCGCGgcccccgccccgggGCGGg -3'
miRNA:   3'- -AUG-GUCGCGGCGau-GG-GGUGCa-------------UGCU- -5'
31085 5' -58.6 NC_006560.1 + 39605 0.66 0.803894
Target:  5'- cGCCGGC-CCGCggaGCgCCGCG-GCGGg -3'
miRNA:   3'- aUGGUCGcGGCGa--UGgGGUGCaUGCU- -5'
31085 5' -58.6 NC_006560.1 + 29291 0.66 0.803894
Target:  5'- cGCCGGC-CCGCccggagcGCCCCGCGUccccGCu- -3'
miRNA:   3'- aUGGUCGcGGCGa------UGGGGUGCA----UGcu -5'
31085 5' -58.6 NC_006560.1 + 113373 0.66 0.803894
Target:  5'- gGCCGcGuCGUCGCggacgGCCCCGCGcUGCu- -3'
miRNA:   3'- aUGGU-C-GCGGCGa----UGGGGUGC-AUGcu -5'
31085 5' -58.6 NC_006560.1 + 49745 0.66 0.795036
Target:  5'- -cCCGGCGguaCGCgGCCCaCGCGcGCGAa -3'
miRNA:   3'- auGGUCGCg--GCGaUGGG-GUGCaUGCU- -5'
31085 5' -58.6 NC_006560.1 + 59019 0.66 0.795036
Target:  5'- gGCCGGCG-CGCUgGCCgCCGCGcaggGCGc -3'
miRNA:   3'- aUGGUCGCgGCGA-UGG-GGUGCa---UGCu -5'
31085 5' -58.6 NC_006560.1 + 67849 0.66 0.795036
Target:  5'- cGCCAGCccggGCCGCgcgccGCCCCcagaggACGUcCGGg -3'
miRNA:   3'- aUGGUCG----CGGCGa----UGGGG------UGCAuGCU- -5'
31085 5' -58.6 NC_006560.1 + 101161 0.66 0.795036
Target:  5'- cGCCAGCaGCCcCaGCCCCugcuCGUACu- -3'
miRNA:   3'- aUGGUCG-CGGcGaUGGGGu---GCAUGcu -5'
31085 5' -58.6 NC_006560.1 + 73861 0.66 0.795036
Target:  5'- cGCCaaGGCGCUGCUggccggggACgCCCGCGaccgGCGGu -3'
miRNA:   3'- aUGG--UCGCGGCGA--------UG-GGGUGCa---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.