miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31085 5' -58.6 NC_006560.1 + 1 0.67 0.739174
Target:  5'- -cCCcGCGCCGCguuuCCCgGCGggGCGGu -3'
miRNA:   3'- auGGuCGCGGCGau--GGGgUGCa-UGCU- -5'
31085 5' -58.6 NC_006560.1 + 1106 0.69 0.589241
Target:  5'- -cCCGGCGgCGCgaGCCCCGCG-ACGc -3'
miRNA:   3'- auGGUCGCgGCGa-UGGGGUGCaUGCu -5'
31085 5' -58.6 NC_006560.1 + 2310 0.7 0.539514
Target:  5'- cGCCGGCgGCgGCcGCCUCGCGcGCGGg -3'
miRNA:   3'- aUGGUCG-CGgCGaUGGGGUGCaUGCU- -5'
31085 5' -58.6 NC_006560.1 + 2875 0.7 0.530703
Target:  5'- gGCCAGCGCgGCgagcaggaaggagagGCCgCCGCGcGCGGc -3'
miRNA:   3'- aUGGUCGCGgCGa--------------UGG-GGUGCaUGCU- -5'
31085 5' -58.6 NC_006560.1 + 3271 0.67 0.739174
Target:  5'- cGCCAGcCGCCGCgggggucgGgCCCGCcggGCGGg -3'
miRNA:   3'- aUGGUC-GCGGCGa-------UgGGGUGca-UGCU- -5'
31085 5' -58.6 NC_006560.1 + 3756 0.66 0.776898
Target:  5'- cGCgGGCGCgGCgGCgCCGCGcgGCGGg -3'
miRNA:   3'- aUGgUCGCGgCGaUGgGGUGCa-UGCU- -5'
31085 5' -58.6 NC_006560.1 + 4713 0.67 0.709893
Target:  5'- cGgCGGCGCuCGCUgcGCCCgGCG-GCGAc -3'
miRNA:   3'- aUgGUCGCG-GCGA--UGGGgUGCaUGCU- -5'
31085 5' -58.6 NC_006560.1 + 5161 0.67 0.748764
Target:  5'- gGCCGGgGCCGCggggGCgggCCGCGgcgACGGc -3'
miRNA:   3'- aUGGUCgCGGCGa---UGg--GGUGCa--UGCU- -5'
31085 5' -58.6 NC_006560.1 + 5251 0.68 0.690035
Target:  5'- gGCCAGCuGCCGCgaggACgCgGCGgcgGCGGc -3'
miRNA:   3'- aUGGUCG-CGGCGa---UGgGgUGCa--UGCU- -5'
31085 5' -58.6 NC_006560.1 + 5293 0.73 0.410053
Target:  5'- -gUCGGCGUCGUcgucgGCCgCCGCGUGCGAc -3'
miRNA:   3'- auGGUCGCGGCGa----UGG-GGUGCAUGCU- -5'
31085 5' -58.6 NC_006560.1 + 6074 0.68 0.680032
Target:  5'- cGCC-GCGcCCGCUcgcGCCCuCGCGU-CGAg -3'
miRNA:   3'- aUGGuCGC-GGCGA---UGGG-GUGCAuGCU- -5'
31085 5' -58.6 NC_006560.1 + 7264 0.68 0.699992
Target:  5'- cGCguGCGCCGCcgACCCCGgaccugccgcCGgcUGCGAu -3'
miRNA:   3'- aUGguCGCGGCGa-UGGGGU----------GC--AUGCU- -5'
31085 5' -58.6 NC_006560.1 + 7427 0.67 0.736279
Target:  5'- -cCCAGgcagccccgcggacCGCCGCggACCCCACGU-CGu -3'
miRNA:   3'- auGGUC--------------GCGGCGa-UGGGGUGCAuGCu -5'
31085 5' -58.6 NC_006560.1 + 7944 0.69 0.599303
Target:  5'- gUGgCGGCGCUGgcGCCCCGCGUcCGGa -3'
miRNA:   3'- -AUgGUCGCGGCgaUGGGGUGCAuGCU- -5'
31085 5' -58.6 NC_006560.1 + 7999 0.67 0.73821
Target:  5'- gGCCuGCGCCuucugguGCUGCCuggcgcacgccgCCACGUGCu- -3'
miRNA:   3'- aUGGuCGCGG-------CGAUGG------------GGUGCAUGcu -5'
31085 5' -58.6 NC_006560.1 + 9566 0.67 0.709893
Target:  5'- -cCCAGgGCCGCgccgaagACgCCCACGaggcgcgGCGAg -3'
miRNA:   3'- auGGUCgCGGCGa------UG-GGGUGCa------UGCU- -5'
31085 5' -58.6 NC_006560.1 + 10314 0.67 0.709893
Target:  5'- gACCGcCGCCGCga-CCCGCGgcccgACGGu -3'
miRNA:   3'- aUGGUcGCGGCGaugGGGUGCa----UGCU- -5'
31085 5' -58.6 NC_006560.1 + 10715 0.7 0.568217
Target:  5'- cGCCGGCGCuCGCgUGCuUCCACGUcgucuccacggccGCGAc -3'
miRNA:   3'- aUGGUCGCG-GCG-AUG-GGGUGCA-------------UGCU- -5'
31085 5' -58.6 NC_006560.1 + 11133 0.66 0.8126
Target:  5'- aGCgGGCGUCGaggGCCCCgggGCGgcgcgGCGAg -3'
miRNA:   3'- aUGgUCGCGGCga-UGGGG---UGCa----UGCU- -5'
31085 5' -58.6 NC_006560.1 + 11240 0.77 0.238756
Target:  5'- gACgGGCGCCGCUugGCCCgACGggGCGAc -3'
miRNA:   3'- aUGgUCGCGGCGA--UGGGgUGCa-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.