miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31086 3' -59.6 NC_006560.1 + 150468 0.66 0.775433
Target:  5'- cGGGGccggCCCCGCCCCgCGG-UCccgGCCc -3'
miRNA:   3'- -CUCUa---GGGGUGGGGgGCCuAGa--UGGu -5'
31086 3' -59.6 NC_006560.1 + 47223 0.66 0.775433
Target:  5'- cGAGAgCCCCuCCCCCCGcGAcCcccCCAa -3'
miRNA:   3'- -CUCUaGGGGuGGGGGGC-CUaGau-GGU- -5'
31086 3' -59.6 NC_006560.1 + 30393 0.66 0.775433
Target:  5'- cGGA-CCCCACCUuccgCCCGGcgCccGCCAg -3'
miRNA:   3'- cUCUaGGGGUGGG----GGGCCuaGa-UGGU- -5'
31086 3' -59.6 NC_006560.1 + 15503 0.66 0.775433
Target:  5'- cGGGG-CCCCGCCCccgaguCCCGGG---GCCAg -3'
miRNA:   3'- -CUCUaGGGGUGGG------GGGCCUagaUGGU- -5'
31086 3' -59.6 NC_006560.1 + 139 0.66 0.775433
Target:  5'- cGGGGccggCCCCGCCCCgCGG-UCccgGCCc -3'
miRNA:   3'- -CUCUa---GGGGUGGGGgGCCuAGa--UGGu -5'
31086 3' -59.6 NC_006560.1 + 16033 0.66 0.766254
Target:  5'- gGGGcgCCggCACCCCCCGGcGUCgACCc -3'
miRNA:   3'- -CUCuaGGg-GUGGGGGGCC-UAGaUGGu -5'
31086 3' -59.6 NC_006560.1 + 177 0.66 0.766254
Target:  5'- -cGGUCCCgGCCCCgCCGGcGUUUuuuuCCGc -3'
miRNA:   3'- cuCUAGGGgUGGGG-GGCC-UAGAu---GGU- -5'
31086 3' -59.6 NC_006560.1 + 1203 0.66 0.766254
Target:  5'- cGGA-CCCCagGCUCCCCGGGggcggggcccCUGCCGc -3'
miRNA:   3'- cUCUaGGGG--UGGGGGGCCUa---------GAUGGU- -5'
31086 3' -59.6 NC_006560.1 + 27857 0.66 0.766254
Target:  5'- gGGGGUCuCCCGCCCgcggCCGGGg--GCCGc -3'
miRNA:   3'- -CUCUAG-GGGUGGGg---GGCCUagaUGGU- -5'
31086 3' -59.6 NC_006560.1 + 150506 0.66 0.766254
Target:  5'- -cGGUCCCgGCCCCgCCGGcGUUUuuuuCCGc -3'
miRNA:   3'- cuCUAGGGgUGGGG-GGCC-UAGAu---GGU- -5'
31086 3' -59.6 NC_006560.1 + 145355 0.66 0.756961
Target:  5'- cGGGG-CCCUcuGCCCCCCGGcccccugGCCGg -3'
miRNA:   3'- -CUCUaGGGG--UGGGGGGCCuaga---UGGU- -5'
31086 3' -59.6 NC_006560.1 + 16474 0.66 0.756961
Target:  5'- ----cCCCgCACCCCCCGGGaaacGCCGa -3'
miRNA:   3'- cucuaGGG-GUGGGGGGCCUaga-UGGU- -5'
31086 3' -59.6 NC_006560.1 + 45667 0.66 0.756961
Target:  5'- --cGUCCCCGuCCgCCCCGGGg--GCCu -3'
miRNA:   3'- cucUAGGGGU-GG-GGGGCCUagaUGGu -5'
31086 3' -59.6 NC_006560.1 + 111995 0.66 0.751334
Target:  5'- -uGGUCCCCGCgccgggccagccggaCCCgCGGAUCUuCCc -3'
miRNA:   3'- cuCUAGGGGUG---------------GGGgGCCUAGAuGGu -5'
31086 3' -59.6 NC_006560.1 + 58516 0.66 0.747562
Target:  5'- uGAGcgucgCCCCGCCCaCCUGGAgCcGCCu -3'
miRNA:   3'- -CUCua---GGGGUGGG-GGGCCUaGaUGGu -5'
31086 3' -59.6 NC_006560.1 + 30149 0.66 0.747562
Target:  5'- ---cUCCCCGCCCgCCCGcAUggGCCAg -3'
miRNA:   3'- cucuAGGGGUGGG-GGGCcUAgaUGGU- -5'
31086 3' -59.6 NC_006560.1 + 145314 0.66 0.738068
Target:  5'- ----cCUCCGCCCCCgCGGGgggcccUCUGCCc -3'
miRNA:   3'- cucuaGGGGUGGGGG-GCCU------AGAUGGu -5'
31086 3' -59.6 NC_006560.1 + 37162 0.66 0.738068
Target:  5'- --cGUCCCCcacgccCCCCCCGGGUCa---- -3'
miRNA:   3'- cucUAGGGGu-----GGGGGGCCUAGauggu -5'
31086 3' -59.6 NC_006560.1 + 105120 0.66 0.738068
Target:  5'- cGGGA-CCgCUacuggGCCCCCCGGGUCgacgcguggUACCGg -3'
miRNA:   3'- -CUCUaGG-GG-----UGGGGGGCCUAG---------AUGGU- -5'
31086 3' -59.6 NC_006560.1 + 30658 0.66 0.738068
Target:  5'- ---cUCCCCccgccGCCCCCCGGccGUCUcgggGCCc -3'
miRNA:   3'- cucuAGGGG-----UGGGGGGCC--UAGA----UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.