miRNA display CGI


Results 21 - 40 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 3' -68.7 NC_006560.1 + 84069 0.66 0.402995
Target:  5'- gGUCgACcccuGGGCCCuguuCGGgcaccCCCCCGCCg -3'
miRNA:   3'- gCAGgUG----CCCGGGc---GCC-----GGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 38204 0.66 0.402995
Target:  5'- uGUagaaaCACGGgcGCCCGUcucCCCCCGCCg -3'
miRNA:   3'- gCAg----GUGCC--CGGGCGcc-GGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 18404 0.66 0.402995
Target:  5'- gGUCaggaCGCGcGCCUGCGGCUgcgaCCCGgCCg -3'
miRNA:   3'- gCAG----GUGCcCGGGCGCCGG----GGGCgGG- -5'
31089 3' -68.7 NC_006560.1 + 126558 0.66 0.402995
Target:  5'- aGggCCACgagggcgaGGGCCaCGCGGaCgCCCGUCUg -3'
miRNA:   3'- gCa-GGUG--------CCCGG-GCGCC-GgGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 116894 0.66 0.402995
Target:  5'- gGUCguCGGccGCCuCGCGGCU-CUGCCCc -3'
miRNA:   3'- gCAGguGCC--CGG-GCGCCGGgGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 39015 0.66 0.402995
Target:  5'- gGcCCAgGGGCuguCCGgGGCCgcgaacugcguCCCGCCg -3'
miRNA:   3'- gCaGGUgCCCG---GGCgCCGG-----------GGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 93470 0.66 0.402995
Target:  5'- gGcCCGcCGGGCCaaaGacaGGCcgaggCCCCGCCUg -3'
miRNA:   3'- gCaGGU-GCCCGGg--Cg--CCG-----GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 58681 0.66 0.402995
Target:  5'- aGUCgGCGGuGCUcggCGCGGCgCCCuccuCCCu -3'
miRNA:   3'- gCAGgUGCC-CGG---GCGCCGgGGGc---GGG- -5'
31089 3' -68.7 NC_006560.1 + 17511 0.66 0.400661
Target:  5'- ---gCGCgGGGCCgGCGGCgCCgccgucgucgucguCCGCCCc -3'
miRNA:   3'- gcagGUG-CCCGGgCGCCG-GG--------------GGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 51789 0.66 0.398335
Target:  5'- cCGgCgGCGGGCgccgggaccguggccCCGCGGUUCCUGCUg -3'
miRNA:   3'- -GCaGgUGCCCG---------------GGCGCCGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 79450 0.66 0.395248
Target:  5'- cCGcUCCGC-GGCgCGUGaGCCCCCGgCg -3'
miRNA:   3'- -GC-AGGUGcCCGgGCGC-CGGGGGCgGg -5'
31089 3' -68.7 NC_006560.1 + 138703 0.66 0.395248
Target:  5'- --cCCGCGGcgacCCCGCGGCCCgagaCGCa- -3'
miRNA:   3'- gcaGGUGCCc---GGGCGCCGGGg---GCGgg -5'
31089 3' -68.7 NC_006560.1 + 109515 0.66 0.395248
Target:  5'- uCGUgCCACGGGggaCUCGCGaacaaggcGUCCCCcCCCg -3'
miRNA:   3'- -GCA-GGUGCCC---GGGCGC--------CGGGGGcGGG- -5'
31089 3' -68.7 NC_006560.1 + 92943 0.66 0.395248
Target:  5'- gGcCCACGaGGCCga-GGCCCUCGUCa -3'
miRNA:   3'- gCaGGUGC-CCGGgcgCCGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 1425 0.66 0.395248
Target:  5'- ---------cCCCGCGGCCCUCGCCCc -3'
miRNA:   3'- gcaggugcccGGGCGCCGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 114762 0.66 0.395248
Target:  5'- aGUaCCGCGcGGCgaCGCccaGGCCCaCgGCCCc -3'
miRNA:   3'- gCA-GGUGC-CCGg-GCG---CCGGG-GgCGGG- -5'
31089 3' -68.7 NC_006560.1 + 100199 0.66 0.395248
Target:  5'- gCGUCU-CGGcGCCCG-GcGCCCagacgCGCCCg -3'
miRNA:   3'- -GCAGGuGCC-CGGGCgC-CGGGg----GCGGG- -5'
31089 3' -68.7 NC_006560.1 + 12791 0.66 0.395248
Target:  5'- --aCCGCGGGgagggaCCCGuCGGCCgggggCCGCUCg -3'
miRNA:   3'- gcaGGUGCCC------GGGC-GCCGGg----GGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 22252 0.66 0.395248
Target:  5'- aGUCgGugUGGGUcaucgacgCCGC-GCCCCCGCCg -3'
miRNA:   3'- gCAGgU--GCCCG--------GGCGcCGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 31213 0.66 0.394479
Target:  5'- --cCCcCGGcaccuccGCUCGCGGCCgCCGCuCCg -3'
miRNA:   3'- gcaGGuGCC-------CGGGCGCCGGgGGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.