miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 5' -55.6 NC_006560.1 + 126798 0.67 0.907766
Target:  5'- cGGGGgcggacagcGGGAaguuGAGGGCGGCGaUCGUGGc -3'
miRNA:   3'- -CCUC---------UCCUc---CUCCUGCUGC-AGUACCa -5'
31089 5' -55.6 NC_006560.1 + 37901 0.67 0.901577
Target:  5'- ---cAGGAGGcccGGAUGACGUaCGUGGa -3'
miRNA:   3'- ccucUCCUCCu--CCUGCUGCA-GUACCa -5'
31089 5' -55.6 NC_006560.1 + 148145 0.67 0.901577
Target:  5'- aGGGGAGcGGGGGGGACGG-GUguaGGUg -3'
miRNA:   3'- -CCUCUC-CUCCUCCUGCUgCAguaCCA- -5'
31089 5' -55.6 NC_006560.1 + 33630 0.67 0.901577
Target:  5'- aGGGGGGGGcGGGGGGCGcCGg---GGg -3'
miRNA:   3'- -CCUCUCCU-CCUCCUGCuGCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 30539 0.67 0.901577
Target:  5'- nGGAGAGGgaGGGAGGcgccccgagGCGGCGcCGcGGc -3'
miRNA:   3'- -CCUCUCC--UCCUCC---------UGCUGCaGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 9079 0.67 0.895158
Target:  5'- gGGAGGGGcGGcGGGGCGACGgc--GGa -3'
miRNA:   3'- -CCUCUCCuCC-UCCUGCUGCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 25620 0.67 0.895158
Target:  5'- gGGAGAGGGGGAGGGgGGgaGggggGGa -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUg-CaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 88965 0.67 0.893188
Target:  5'- cGGAGAGGcGGAGGAucggccggcuccccCGGCGccCGUcGGUu -3'
miRNA:   3'- -CCUCUCCuCCUCCU--------------GCUGCa-GUA-CCA- -5'
31089 5' -55.6 NC_006560.1 + 30454 0.67 0.888512
Target:  5'- aGGAGcAGGAGGAGGAgGAgGaggagCA-GGa -3'
miRNA:   3'- -CCUC-UCCUCCUCCUgCUgCa----GUaCCa -5'
31089 5' -55.6 NC_006560.1 + 37 0.67 0.888512
Target:  5'- cGGGGGGGgugcguuuGGGGGGGCG-CGUU-UGGg -3'
miRNA:   3'- -CCUCUCC--------UCCUCCUGCuGCAGuACCa -5'
31089 5' -55.6 NC_006560.1 + 32885 0.67 0.888512
Target:  5'- cGGGGAGGccgcGGGGGGGCG-CGcccgCggGGUa -3'
miRNA:   3'- -CCUCUCC----UCCUCCUGCuGCa---GuaCCA- -5'
31089 5' -55.6 NC_006560.1 + 143580 0.67 0.888512
Target:  5'- cGGGGAGGGGGGGuucGCGAgCGagaggCGUGGc -3'
miRNA:   3'- -CCUCUCCUCCUCc--UGCU-GCa----GUACCa -5'
31089 5' -55.6 NC_006560.1 + 150366 0.67 0.888512
Target:  5'- cGGGGGGGgugcguuuGGGGGGGCG-CGUU-UGGg -3'
miRNA:   3'- -CCUCUCC--------UCCUCCUGCuGCAGuACCa -5'
31089 5' -55.6 NC_006560.1 + 59481 0.67 0.888512
Target:  5'- cGGGcGGGAGGucgcGGACGGCGgUGUGGc -3'
miRNA:   3'- -CCUcUCCUCCu---CCUGCUGCaGUACCa -5'
31089 5' -55.6 NC_006560.1 + 32648 0.67 0.881644
Target:  5'- aGGGGAGGAGGccgcccGGCGGCGgCAcGGg -3'
miRNA:   3'- -CCUCUCCUCCuc----CUGCUGCaGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 33400 0.67 0.881644
Target:  5'- gGGAGAGGGGGGcgcGGGCGgggaGCGcCGgcgGGa -3'
miRNA:   3'- -CCUCUCCUCCU---CCUGC----UGCaGUa--CCa -5'
31089 5' -55.6 NC_006560.1 + 120778 0.67 0.881644
Target:  5'- aGGGGAGGGGaGGGGCGGgGgaacUCAcguUGGUg -3'
miRNA:   3'- -CCUCUCCUCcUCCUGCUgC----AGU---ACCA- -5'
31089 5' -55.6 NC_006560.1 + 126746 0.67 0.874557
Target:  5'- ----cGGAGGAGGACGACGagcgcggcgaaCGUGGc -3'
miRNA:   3'- ccucuCCUCCUCCUGCUGCa----------GUACCa -5'
31089 5' -55.6 NC_006560.1 + 118440 0.68 0.859747
Target:  5'- cGGGGGcGAGGuccuGGGCGACGUCcUGa- -3'
miRNA:   3'- cCUCUC-CUCCu---CCUGCUGCAGuACca -5'
31089 5' -55.6 NC_006560.1 + 8880 0.68 0.852035
Target:  5'- gGGGGAGGcGGGGGGCuucgcGCGggccacgCGUGGUc -3'
miRNA:   3'- -CCUCUCCuCCUCCUGc----UGCa------GUACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.