miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3109 3' -51.9 NC_001493.1 + 102220 0.66 0.986474
Target:  5'- aGGGUCGcguggcUGAUGaGcgCGCUCGCGGGg -3'
miRNA:   3'- -CCUAGCu-----ACUGCcCaaGUGAGCGUCU- -5'
3109 3' -51.9 NC_001493.1 + 120871 0.66 0.986474
Target:  5'- aGGA-CG-UGGCGGGggCACcCGUGGGc -3'
miRNA:   3'- -CCUaGCuACUGCCCaaGUGaGCGUCU- -5'
3109 3' -51.9 NC_001493.1 + 82920 0.66 0.986474
Target:  5'- uGAUCGGUGGaucg--CACUCGCGGGg -3'
miRNA:   3'- cCUAGCUACUgcccaaGUGAGCGUCU- -5'
3109 3' -51.9 NC_001493.1 + 5317 0.66 0.986474
Target:  5'- aGGA-CG-UGGCGGGggCACcCGUGGGc -3'
miRNA:   3'- -CCUaGCuACUGCCCaaGUGaGCGUCU- -5'
3109 3' -51.9 NC_001493.1 + 12830 0.66 0.980755
Target:  5'- gGGGUCGG-GGCGcucGGgaUACUCGCGGc -3'
miRNA:   3'- -CCUAGCUaCUGC---CCaaGUGAGCGUCu -5'
3109 3' -51.9 NC_001493.1 + 128384 0.66 0.980755
Target:  5'- gGGGUCGG-GGCGcucGGgaUACUCGCGGc -3'
miRNA:   3'- -CCUAGCUaCUGC---CCaaGUGAGCGUCu -5'
3109 3' -51.9 NC_001493.1 + 102168 0.66 0.980755
Target:  5'- cGGAUCucgGAcCGGGUgucucgagCACgCGCAGAa -3'
miRNA:   3'- -CCUAGcuaCU-GCCCAa-------GUGaGCGUCU- -5'
3109 3' -51.9 NC_001493.1 + 48179 0.67 0.976045
Target:  5'- cGGGUUGggGGcCGGGUUCgacaggcugcGCUCGCu-- -3'
miRNA:   3'- -CCUAGCuaCU-GCCCAAG----------UGAGCGucu -5'
3109 3' -51.9 NC_001493.1 + 38324 0.67 0.973397
Target:  5'- uGAUCGAUGAUGGauauuUUCAaUUCGguGAg -3'
miRNA:   3'- cCUAGCUACUGCCc----AAGU-GAGCguCU- -5'
3109 3' -51.9 NC_001493.1 + 106180 0.67 0.97171
Target:  5'- -cAUCGGUGuacCGGGgggacuugaguaggUCGCUCGCGGu -3'
miRNA:   3'- ccUAGCUACu--GCCCa-------------AGUGAGCGUCu -5'
3109 3' -51.9 NC_001493.1 + 123555 0.68 0.948735
Target:  5'- gGGAUCGAUcACGGGUUgaACUUuCGGGa -3'
miRNA:   3'- -CCUAGCUAcUGCCCAAg-UGAGcGUCU- -5'
3109 3' -51.9 NC_001493.1 + 8001 0.68 0.948735
Target:  5'- gGGAUCGAUcACGGGUUgaACUUuCGGGa -3'
miRNA:   3'- -CCUAGCUAcUGCCCAAg-UGAGcGUCU- -5'
3109 3' -51.9 NC_001493.1 + 30476 0.7 0.885959
Target:  5'- gGGAUCGGgucgGACGGGgcgaUCgugUCGCGGGa -3'
miRNA:   3'- -CCUAGCUa---CUGCCCa---AGug-AGCGUCU- -5'
3109 3' -51.9 NC_001493.1 + 100977 0.71 0.863749
Target:  5'- gGGAgcuUCGggGGCGGGggUugUCGcCGGAa -3'
miRNA:   3'- -CCU---AGCuaCUGCCCaaGugAGC-GUCU- -5'
3109 3' -51.9 NC_001493.1 + 99526 1.12 0.004724
Target:  5'- gGGAUCGAUGACGGGUUCACUCGCAGAg -3'
miRNA:   3'- -CCUAGCUACUGCCCAAGUGAGCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.