miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3109 5' -54.4 NC_001493.1 + 73078 0.66 0.940908
Target:  5'- cGUgCGGGCGG-GcACCC-GugAUCGAc -3'
miRNA:   3'- uCAgGCCCGUCaC-UGGGuUugUAGCU- -5'
3109 5' -54.4 NC_001493.1 + 61331 0.66 0.940908
Target:  5'- -aUCCGaGGCAGguUGGCCCGGAgucCcgCGAc -3'
miRNA:   3'- ucAGGC-CCGUC--ACUGGGUUU---GuaGCU- -5'
3109 5' -54.4 NC_001493.1 + 36115 0.66 0.940908
Target:  5'- uGUUgGGGaAGUGACgcuUCGAGCGUCGGu -3'
miRNA:   3'- uCAGgCCCgUCACUG---GGUUUGUAGCU- -5'
3109 5' -54.4 NC_001493.1 + 71596 0.66 0.936048
Target:  5'- uGGUCuCGGGCgagcgAGUGACUCccggugugAAAUGUCGGg -3'
miRNA:   3'- -UCAG-GCCCG-----UCACUGGG--------UUUGUAGCU- -5'
3109 5' -54.4 NC_001493.1 + 60064 0.66 0.925586
Target:  5'- uGGUgCGGGCcgcgaaaccGGUGACCguGACGgguuggCGAg -3'
miRNA:   3'- -UCAgGCCCG---------UCACUGGguUUGUa-----GCU- -5'
3109 5' -54.4 NC_001493.1 + 50377 0.66 0.925036
Target:  5'- gAGUCCGGGaugauacCGG-GACCCAGccACA-CGGg -3'
miRNA:   3'- -UCAGGCCC-------GUCaCUGGGUU--UGUaGCU- -5'
3109 5' -54.4 NC_001493.1 + 20495 0.67 0.88829
Target:  5'- gGGuUCCGGGCAugagccauGUGAuaggccCCCGGGCcUCGAu -3'
miRNA:   3'- -UC-AGGCCCGU--------CACU------GGGUUUGuAGCU- -5'
3109 5' -54.4 NC_001493.1 + 113875 0.68 0.881235
Target:  5'- --aUCGGGCGGUagugGAcCCCGAGCGUCu- -3'
miRNA:   3'- ucaGGCCCGUCA----CU-GGGUUUGUAGcu -5'
3109 5' -54.4 NC_001493.1 + 3221 0.68 0.873949
Target:  5'- gAGUCaGaGGCGGacgagGACCCGGACgagGUCGAg -3'
miRNA:   3'- -UCAGgC-CCGUCa----CUGGGUUUG---UAGCU- -5'
3109 5' -54.4 NC_001493.1 + 118775 0.68 0.873949
Target:  5'- gAGUCaGaGGCGGacgagGACCCGGACgagGUCGAg -3'
miRNA:   3'- -UCAGgC-CCGUCa----CUGGGUUUG---UAGCU- -5'
3109 5' -54.4 NC_001493.1 + 108805 0.7 0.770997
Target:  5'- aGGUgCCGGGCcugGACCCGAGauUCGAu -3'
miRNA:   3'- -UCA-GGCCCGucaCUGGGUUUguAGCU- -5'
3109 5' -54.4 NC_001493.1 + 117518 0.71 0.731808
Target:  5'- uGUCUacggaaGGCGGUGACCCAAG-GUCGAu -3'
miRNA:   3'- uCAGGc-----CCGUCACUGGGUUUgUAGCU- -5'
3109 5' -54.4 NC_001493.1 + 1964 0.71 0.731808
Target:  5'- uGUCUacggaaGGCGGUGACCCAAG-GUCGAu -3'
miRNA:   3'- uCAGGc-----CCGUCACUGGGUUUgUAGCU- -5'
3109 5' -54.4 NC_001493.1 + 93475 0.71 0.70144
Target:  5'- cGGUCCGcGCGGUcACCCGAACcAUCGc -3'
miRNA:   3'- -UCAGGCcCGUCAcUGGGUUUG-UAGCu -5'
3109 5' -54.4 NC_001493.1 + 47350 0.72 0.670528
Target:  5'- aAGUCCauauGC-GUGACCCAGGCGUUGAc -3'
miRNA:   3'- -UCAGGcc--CGuCACUGGGUUUGUAGCU- -5'
3109 5' -54.4 NC_001493.1 + 48194 0.73 0.587304
Target:  5'- uGGUCuCGGGC-GUGaACCCAuuguacGCGUCGAa -3'
miRNA:   3'- -UCAG-GCCCGuCAC-UGGGUu-----UGUAGCU- -5'
3109 5' -54.4 NC_001493.1 + 29138 0.75 0.520046
Target:  5'- uGGUCCGGGCcGUGcCCCcgcguucggcccguaGAGCAUCGu -3'
miRNA:   3'- -UCAGGCCCGuCACuGGG---------------UUUGUAGCu -5'
3109 5' -54.4 NC_001493.1 + 99560 1.09 0.003517
Target:  5'- gAGUCCGGGCAGUGACCCAAACAUCGAu -3'
miRNA:   3'- -UCAGGCCCGUCACUGGGUUUGUAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.