miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31090 3' -60.5 NC_006560.1 + 25309 0.66 0.71793
Target:  5'- aCCCCGcCGcCGcGCCgCGCGUgcgcuGGGcCg -3'
miRNA:   3'- -GGGGCaGC-GC-CGGaGCGCAau---CCCaG- -5'
31090 3' -60.5 NC_006560.1 + 55710 0.66 0.71793
Target:  5'- gCCCGccCGC-GCCUcCGaCGUcAGGGUCg -3'
miRNA:   3'- gGGGCa-GCGcCGGA-GC-GCAaUCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 105496 0.66 0.71793
Target:  5'- aCCCGUcCGCGGCCgcgcuccugCGCuccAGGGcCu -3'
miRNA:   3'- gGGGCA-GCGCCGGa--------GCGcaaUCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 111958 0.66 0.71793
Target:  5'- cCCCCGcuggagcgcuUUGCGGCCcaCGCGggGGaccuGGUCc -3'
miRNA:   3'- -GGGGC----------AGCGCCGGa-GCGCaaUC----CCAG- -5'
31090 3' -60.5 NC_006560.1 + 97168 0.67 0.70837
Target:  5'- gCCCUGUCGCGcgucgaCCUCGCGgacuGcGUCg -3'
miRNA:   3'- -GGGGCAGCGCc-----GGAGCGCaau-CcCAG- -5'
31090 3' -60.5 NC_006560.1 + 71175 0.67 0.70837
Target:  5'- gUCCCGcCGCGGacuCCUCcCGggAGGaGUCc -3'
miRNA:   3'- -GGGGCaGCGCC---GGAGcGCaaUCC-CAG- -5'
31090 3' -60.5 NC_006560.1 + 23741 0.67 0.70837
Target:  5'- gCCgCCGUCGCcGCCgugCGCGccgUGGGccucGUCg -3'
miRNA:   3'- -GG-GGCAGCGcCGGa--GCGCa--AUCC----CAG- -5'
31090 3' -60.5 NC_006560.1 + 10407 0.67 0.70741
Target:  5'- cCCgCUGUCGCucggucgGGCCUCGCGg-AGcGUCa -3'
miRNA:   3'- -GG-GGCAGCG-------CCGGAGCGCaaUCcCAG- -5'
31090 3' -60.5 NC_006560.1 + 106128 0.67 0.69875
Target:  5'- aCCUGUCGCgGGCCUaCGCcgagaucuucgGggAGGGg- -3'
miRNA:   3'- gGGGCAGCG-CCGGA-GCG-----------CaaUCCCag -5'
31090 3' -60.5 NC_006560.1 + 106419 0.67 0.69875
Target:  5'- gCCUCGg-GCGGCUggcCGCGgaGGcGGUCg -3'
miRNA:   3'- -GGGGCagCGCCGGa--GCGCaaUC-CCAG- -5'
31090 3' -60.5 NC_006560.1 + 109721 0.67 0.69875
Target:  5'- gCCCGgcguauaugaGCGGCCggGCG--GGGGUCc -3'
miRNA:   3'- gGGGCag--------CGCCGGagCGCaaUCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 42702 0.67 0.689079
Target:  5'- uCUgCGUC-CGGCCgucUCGCGUcAGGGcCg -3'
miRNA:   3'- -GGgGCAGcGCCGG---AGCGCAaUCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 65037 0.67 0.689079
Target:  5'- gCCCGgagCGgGGCCgggCGCGggggcAGGGg- -3'
miRNA:   3'- gGGGCa--GCgCCGGa--GCGCaa---UCCCag -5'
31090 3' -60.5 NC_006560.1 + 11534 0.67 0.679365
Target:  5'- cCCCCGcCGgGGg-UCGCGgggucgGGGGUCu -3'
miRNA:   3'- -GGGGCaGCgCCggAGCGCaa----UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 100246 0.67 0.679365
Target:  5'- gCCUCG--GCGGCCUCGCGgcgcAGGaUCu -3'
miRNA:   3'- -GGGGCagCGCCGGAGCGCaa--UCCcAG- -5'
31090 3' -60.5 NC_006560.1 + 72343 0.67 0.678391
Target:  5'- cCUCCGUcggggguguggggCGCGGcCCUCGCG--GGGG-Cg -3'
miRNA:   3'- -GGGGCA-------------GCGCC-GGAGCGCaaUCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 134245 0.67 0.666683
Target:  5'- gCCCGccccCGCGGCC-CGCccgaagccgggcagGgcGGGGUCg -3'
miRNA:   3'- gGGGCa---GCGCCGGaGCG--------------CaaUCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 432 0.67 0.655918
Target:  5'- uCCCCGgccucCGCGGCCUCcGCGgccuccccggcGGG-Cg -3'
miRNA:   3'- -GGGGCa----GCGCCGGAG-CGCaau--------CCCaG- -5'
31090 3' -60.5 NC_006560.1 + 736 0.68 0.652978
Target:  5'- gCCCCGUcccccccCGCGGCCccguccccccccccCGCGgcgcGGGUCc -3'
miRNA:   3'- -GGGGCA-------GCGCCGGa-------------GCGCaau-CCCAG- -5'
31090 3' -60.5 NC_006560.1 + 50984 0.68 0.650037
Target:  5'- gCCCGagGCGGCCgccuucCGCagcuccggGGGGUCc -3'
miRNA:   3'- gGGGCagCGCCGGa-----GCGcaa-----UCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.