miRNA display CGI


Results 1 - 20 of 455 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31090 5' -54.3 NC_006560.1 + 49589 1.11 0.004171
Target:  5'- cCCGACACCGACACACAACGCGACCGAc -3'
miRNA:   3'- -GGCUGUGGCUGUGUGUUGCGCUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 24019 0.85 0.175071
Target:  5'- gCCGACGCCGACGC-CGACGCcgacGCCGAc -3'
miRNA:   3'- -GGCUGUGGCUGUGuGUUGCGc---UGGCU- -5'
31090 5' -54.3 NC_006560.1 + 15797 0.84 0.193362
Target:  5'- cCCGGCGCCGGCG-GCGAcCGCGGCCGAc -3'
miRNA:   3'- -GGCUGUGGCUGUgUGUU-GCGCUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 11379 0.84 0.213305
Target:  5'- gCCGGCGCCGACgACACcGC-CGACCGAg -3'
miRNA:   3'- -GGCUGUGGCUG-UGUGuUGcGCUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 135972 0.83 0.229401
Target:  5'- gCCGACAucacCCGGCGCGCgGugGCGGCCGGg -3'
miRNA:   3'- -GGCUGU----GGCUGUGUG-UugCGCUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 23897 0.83 0.229401
Target:  5'- gCCGACGCCGACGC-CGcccGCGCGGCCc- -3'
miRNA:   3'- -GGCUGUGGCUGUGuGU---UGCGCUGGcu -5'
31090 5' -54.3 NC_006560.1 + 124232 0.82 0.270952
Target:  5'- cCCGACGCCGACGC-CGACGCc-CCGGa -3'
miRNA:   3'- -GGCUGUGGCUGUGuGUUGCGcuGGCU- -5'
31090 5' -54.3 NC_006560.1 + 85239 0.8 0.332986
Target:  5'- gUGACGCCGGCGCccGCGGCGCGgaaGCCGGc -3'
miRNA:   3'- gGCUGUGGCUGUG--UGUUGCGC---UGGCU- -5'
31090 5' -54.3 NC_006560.1 + 89696 0.79 0.371709
Target:  5'- gCCGACGCCGACGCGgCGGuCGCG-CCGc -3'
miRNA:   3'- -GGCUGUGGCUGUGU-GUU-GCGCuGGCu -5'
31090 5' -54.3 NC_006560.1 + 113622 0.79 0.396371
Target:  5'- gCCGGCGCCGAC-CACGugaugaACGCGcCCGGc -3'
miRNA:   3'- -GGCUGUGGCUGuGUGU------UGCGCuGGCU- -5'
31090 5' -54.3 NC_006560.1 + 57150 0.78 0.413388
Target:  5'- gUCGGCGCCGACcCACGcgggguggGCGCGuCCGAa -3'
miRNA:   3'- -GGCUGUGGCUGuGUGU--------UGCGCuGGCU- -5'
31090 5' -54.3 NC_006560.1 + 128469 0.78 0.413388
Target:  5'- cCUGACGCCGcCGgGCGACGUGGCCa- -3'
miRNA:   3'- -GGCUGUGGCuGUgUGUUGCGCUGGcu -5'
31090 5' -54.3 NC_006560.1 + 23476 0.78 0.413388
Target:  5'- -gGACGCCGACGCcgcCGACGCcGCCGAc -3'
miRNA:   3'- ggCUGUGGCUGUGu--GUUGCGcUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 128815 0.78 0.430848
Target:  5'- gCGACGCguCGGCGCGCGccgACGCGGCCGc -3'
miRNA:   3'- gGCUGUG--GCUGUGUGU---UGCGCUGGCu -5'
31090 5' -54.3 NC_006560.1 + 139788 0.78 0.430848
Target:  5'- gCGGCgaGCCGACGgACGACGCuGCCGAc -3'
miRNA:   3'- gGCUG--UGGCUGUgUGUUGCGcUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 115057 0.78 0.448732
Target:  5'- gCCGACGCCGcgGCGCuGCAGCGCugcgagGGCCGGg -3'
miRNA:   3'- -GGCUGUGGC--UGUG-UGUUGCG------CUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 25050 0.78 0.448732
Target:  5'- gCCGACucGCCcGCGCGCGAgGCGGCCGc -3'
miRNA:   3'- -GGCUG--UGGcUGUGUGUUgCGCUGGCu -5'
31090 5' -54.3 NC_006560.1 + 1446 0.77 0.457827
Target:  5'- cCCGGCACCG-CACGCcucCGCGGCCc- -3'
miRNA:   3'- -GGCUGUGGCuGUGUGuu-GCGCUGGcu -5'
31090 5' -54.3 NC_006560.1 + 54599 0.77 0.476306
Target:  5'- cCCGACGCCcGCGCGCccacgccCGCGACCGc -3'
miRNA:   3'- -GGCUGUGGcUGUGUGuu-----GCGCUGGCu -5'
31090 5' -54.3 NC_006560.1 + 13653 0.77 0.495149
Target:  5'- cCCGccCGCCGAgACGCAcgcgaGCGCGACCGc -3'
miRNA:   3'- -GGCu-GUGGCUgUGUGU-----UGCGCUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.