miRNA display CGI


Results 21 - 40 of 455 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31090 5' -54.3 NC_006560.1 + 37113 0.66 0.97156
Target:  5'- cCCGACccaagccucgccgAUCGACcccCGCcGCGCcGACCGAc -3'
miRNA:   3'- -GGCUG-------------UGGCUGu--GUGuUGCG-CUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 2394 0.66 0.970999
Target:  5'- gCGGCAgCGGCACGgCGgugucgggccccagGCGCGugCGc -3'
miRNA:   3'- gGCUGUgGCUGUGU-GU--------------UGCGCugGCu -5'
31090 5' -54.3 NC_006560.1 + 70408 0.66 0.970141
Target:  5'- gCGGCACCuAC-CACGACGCcaagcgcgcccucacGGCCGc -3'
miRNA:   3'- gGCUGUGGcUGuGUGUUGCG---------------CUGGCu -5'
31090 5' -54.3 NC_006560.1 + 12202 0.66 0.96897
Target:  5'- uCCGcC-CCGACGgGCccCGCGGCCa- -3'
miRNA:   3'- -GGCuGuGGCUGUgUGuuGCGCUGGcu -5'
31090 5' -54.3 NC_006560.1 + 92399 0.66 0.96897
Target:  5'- gCCGGgGCCcGCGCGCucgugGACGCGGuCCa- -3'
miRNA:   3'- -GGCUgUGGcUGUGUG-----UUGCGCU-GGcu -5'
31090 5' -54.3 NC_006560.1 + 75724 0.66 0.96897
Target:  5'- uUCGGCGCCGcCGCcgaGACGUacGCCGAg -3'
miRNA:   3'- -GGCUGUGGCuGUGug-UUGCGc-UGGCU- -5'
31090 5' -54.3 NC_006560.1 + 70200 0.66 0.96897
Target:  5'- gCCGACcucgucgcccggGCCGACcccuucgucGCGCAgaucgaggACGCGAUCGu -3'
miRNA:   3'- -GGCUG------------UGGCUG---------UGUGU--------UGCGCUGGCu -5'
31090 5' -54.3 NC_006560.1 + 67043 0.66 0.96897
Target:  5'- gCGAgCGCCGGugggcCGCAgGACGUGAUgGAg -3'
miRNA:   3'- gGCU-GUGGCU-----GUGUgUUGCGCUGgCU- -5'
31090 5' -54.3 NC_006560.1 + 3646 0.66 0.96897
Target:  5'- gCGACGgCGGC-CuCGGCGCcGCCGGg -3'
miRNA:   3'- gGCUGUgGCUGuGuGUUGCGcUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 38050 0.66 0.96897
Target:  5'- aUCGACGCCGAUGuCAUguuCuCGGCCGGg -3'
miRNA:   3'- -GGCUGUGGCUGU-GUGuu-GcGCUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 57085 0.66 0.96897
Target:  5'- gCCaGCGCCGuCAgGCc-CGCGGCCGc -3'
miRNA:   3'- -GGcUGUGGCuGUgUGuuGCGCUGGCu -5'
31090 5' -54.3 NC_006560.1 + 129798 0.66 0.96897
Target:  5'- aCCG-CAUCGAC-CGCAGCgGCuGCCGc -3'
miRNA:   3'- -GGCuGUGGCUGuGUGUUG-CGcUGGCu -5'
31090 5' -54.3 NC_006560.1 + 124825 0.66 0.96897
Target:  5'- cCCGuCGCgGGCGUGC-ACGCGugCGGg -3'
miRNA:   3'- -GGCuGUGgCUGUGUGuUGCGCugGCU- -5'
31090 5' -54.3 NC_006560.1 + 111437 0.66 0.96897
Target:  5'- gCGGgcCACCG-C-CGCGAgGCGAUCGAg -3'
miRNA:   3'- gGCU--GUGGCuGuGUGUUgCGCUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 110750 0.66 0.96897
Target:  5'- aCG-CACCGccuACGgGC-ACGCGGCCGc -3'
miRNA:   3'- gGCuGUGGC---UGUgUGuUGCGCUGGCu -5'
31090 5' -54.3 NC_006560.1 + 90310 0.66 0.96897
Target:  5'- cCCGuCGCCGugGCGCucCGgGcCCGc -3'
miRNA:   3'- -GGCuGUGGCugUGUGuuGCgCuGGCu -5'
31090 5' -54.3 NC_006560.1 + 69193 0.66 0.96897
Target:  5'- uCCGugguCAUCGACGCGCugaucGACGCGGgCu- -3'
miRNA:   3'- -GGCu---GUGGCUGUGUG-----UUGCGCUgGcu -5'
31090 5' -54.3 NC_006560.1 + 131982 0.66 0.968672
Target:  5'- cUCGACGCCGAgUACugGGCGgucgcggagggccCGuCCGAc -3'
miRNA:   3'- -GGCUGUGGCU-GUGugUUGC-------------GCuGGCU- -5'
31090 5' -54.3 NC_006560.1 + 27407 0.66 0.965899
Target:  5'- cCCG-CGgCGGCGCGCG-CGCGGgccuCCGGc -3'
miRNA:   3'- -GGCuGUgGCUGUGUGUuGCGCU----GGCU- -5'
31090 5' -54.3 NC_006560.1 + 142516 0.66 0.965899
Target:  5'- cCCGGCGCCcccGGgGCGgGGCcccgggcccgGCGGCCGGg -3'
miRNA:   3'- -GGCUGUGG---CUgUGUgUUG----------CGCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.