miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31091 5' -53.8 NC_006560.1 + 45042 0.67 0.963861
Target:  5'- gCGUCUCuGUCGUgUgUcgUUCGUCCUCc- -3'
miRNA:   3'- -GCAGAG-CAGCAgAgA--AAGCGGGAGcc -5'
31091 5' -53.8 NC_006560.1 + 8381 0.67 0.952937
Target:  5'- gGUC-CGUCuGUCggUCgcUCGCCuCUCGGu -3'
miRNA:   3'- gCAGaGCAG-CAG--AGaaAGCGG-GAGCC- -5'
31091 5' -53.8 NC_006560.1 + 13777 0.68 0.924935
Target:  5'- -aUCgcgCGcCGgCUCgaUCGCCCUCGGu -3'
miRNA:   3'- gcAGa--GCaGCaGAGaaAGCGGGAGCC- -5'
31091 5' -53.8 NC_006560.1 + 10827 0.68 0.924935
Target:  5'- -uUCUCGUCGUCUCcccUCuUCCUCGc -3'
miRNA:   3'- gcAGAGCAGCAGAGaa-AGcGGGAGCc -5'
31091 5' -53.8 NC_006560.1 + 98251 0.69 0.913723
Target:  5'- uCGUCUcCGcCGUCUCgggcgUGUCCUCGu -3'
miRNA:   3'- -GCAGA-GCaGCAGAGaaa--GCGGGAGCc -5'
31091 5' -53.8 NC_006560.1 + 12895 0.69 0.895158
Target:  5'- gGUgCUCGUgGUCgg---CGCCUUCGGg -3'
miRNA:   3'- gCA-GAGCAgCAGagaaaGCGGGAGCC- -5'
31091 5' -53.8 NC_006560.1 + 148017 0.7 0.852035
Target:  5'- cCGUCgUCGUCGUCgUCgacguccgagUCGUCgUCGGa -3'
miRNA:   3'- -GCAG-AGCAGCAG-AGaa--------AGCGGgAGCC- -5'
31091 5' -53.8 NC_006560.1 + 71313 0.71 0.827747
Target:  5'- gGUCcgCGUCGUgUCg--CGCCCgcucgCGGg -3'
miRNA:   3'- gCAGa-GCAGCAgAGaaaGCGGGa----GCC- -5'
31091 5' -53.8 NC_006560.1 + 147514 0.71 0.801882
Target:  5'- uCGUCgcCGUCGUCgCUgucgUCGCUgUCGGu -3'
miRNA:   3'- -GCAGa-GCAGCAGaGAa---AGCGGgAGCC- -5'
31091 5' -53.8 NC_006560.1 + 9376 0.72 0.792947
Target:  5'- gCGg-UCGUCGUCggagucgUCGUCCUCGGa -3'
miRNA:   3'- -GCagAGCAGCAGagaa---AGCGGGAGCC- -5'
31091 5' -53.8 NC_006560.1 + 8736 0.72 0.792947
Target:  5'- cCGUCUCGUCGUCgCUcucCGUguaguacgCCUCGGc -3'
miRNA:   3'- -GCAGAGCAGCAGaGAaa-GCG--------GGAGCC- -5'
31091 5' -53.8 NC_006560.1 + 47935 0.73 0.736636
Target:  5'- aCGUCgaggCGUgCGUCUCUcgCGCCCUUu- -3'
miRNA:   3'- -GCAGa---GCA-GCAGAGAaaGCGGGAGcc -5'
31091 5' -53.8 NC_006560.1 + 47792 1.12 0.003704
Target:  5'- aCGUCUCGUCGUCUCUUUCGCCCUCGGg -3'
miRNA:   3'- -GCAGAGCAGCAGAGAAAGCGGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.