Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31091 | 5' | -53.8 | NC_006560.1 | + | 148017 | 0.7 | 0.852035 |
Target: 5'- cCGUCgUCGUCGUCgUCgacguccgagUCGUCgUCGGa -3' miRNA: 3'- -GCAG-AGCAGCAG-AGaa--------AGCGGgAGCC- -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 147514 | 0.71 | 0.801882 |
Target: 5'- uCGUCgcCGUCGUCgCUgucgUCGCUgUCGGu -3' miRNA: 3'- -GCAGa-GCAGCAGaGAa---AGCGGgAGCC- -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 98251 | 0.69 | 0.913723 |
Target: 5'- uCGUCUcCGcCGUCUCgggcgUGUCCUCGu -3' miRNA: 3'- -GCAGA-GCaGCAGAGaaa--GCGGGAGCc -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 71313 | 0.71 | 0.827747 |
Target: 5'- gGUCcgCGUCGUgUCg--CGCCCgcucgCGGg -3' miRNA: 3'- gCAGa-GCAGCAgAGaaaGCGGGa----GCC- -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 47935 | 0.73 | 0.736636 |
Target: 5'- aCGUCgaggCGUgCGUCUCUcgCGCCCUUu- -3' miRNA: 3'- -GCAGa---GCA-GCAGAGAaaGCGGGAGcc -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 47792 | 1.12 | 0.003704 |
Target: 5'- aCGUCUCGUCGUCUCUUUCGCCCUCGGg -3' miRNA: 3'- -GCAGAGCAGCAGAGAAAGCGGGAGCC- -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 45042 | 0.67 | 0.963861 |
Target: 5'- gCGUCUCuGUCGUgUgUcgUUCGUCCUCc- -3' miRNA: 3'- -GCAGAG-CAGCAgAgA--AAGCGGGAGcc -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 13777 | 0.68 | 0.924935 |
Target: 5'- -aUCgcgCGcCGgCUCgaUCGCCCUCGGu -3' miRNA: 3'- gcAGa--GCaGCaGAGaaAGCGGGAGCC- -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 12895 | 0.69 | 0.895158 |
Target: 5'- gGUgCUCGUgGUCgg---CGCCUUCGGg -3' miRNA: 3'- gCA-GAGCAgCAGagaaaGCGGGAGCC- -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 10827 | 0.68 | 0.924935 |
Target: 5'- -uUCUCGUCGUCUCcccUCuUCCUCGc -3' miRNA: 3'- gcAGAGCAGCAGAGaa-AGcGGGAGCc -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 9376 | 0.72 | 0.792947 |
Target: 5'- gCGg-UCGUCGUCggagucgUCGUCCUCGGa -3' miRNA: 3'- -GCagAGCAGCAGagaa---AGCGGGAGCC- -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 8736 | 0.72 | 0.792947 |
Target: 5'- cCGUCUCGUCGUCgCUcucCGUguaguacgCCUCGGc -3' miRNA: 3'- -GCAGAGCAGCAGaGAaa-GCG--------GGAGCC- -5' |
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31091 | 5' | -53.8 | NC_006560.1 | + | 8381 | 0.67 | 0.952937 |
Target: 5'- gGUC-CGUCuGUCggUCgcUCGCCuCUCGGu -3' miRNA: 3'- gCAGaGCAG-CAG--AGaaAGCGG-GAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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