miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 3' -56.9 NC_006560.1 + 139260 0.66 0.878174
Target:  5'- ---cGGAC-CCCCGggGGCGcGCGGUCGu -3'
miRNA:   3'- auauUCUGcGGGGCa-CUGC-UGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 115769 0.66 0.878174
Target:  5'- --cGAGGCGCCCgGgccgccgcagGACGGCGaGCgGc -3'
miRNA:   3'- auaUUCUGCGGGgCa---------CUGCUGC-CGgC- -5'
31093 3' -56.9 NC_006560.1 + 18462 0.66 0.878174
Target:  5'- --gAGGACGCCCCGcgGgagaGCGAggaGGUCGc -3'
miRNA:   3'- auaUUCUGCGGGGCa-C----UGCUg--CCGGC- -5'
31093 3' -56.9 NC_006560.1 + 82736 0.66 0.878174
Target:  5'- cGUGccGgGCCCCGgGACGGCGGaCGa -3'
miRNA:   3'- aUAUucUgCGGGGCaCUGCUGCCgGC- -5'
31093 3' -56.9 NC_006560.1 + 12696 0.66 0.878174
Target:  5'- ----uGGCG-CCCGUGugGuCGGCgGg -3'
miRNA:   3'- auauuCUGCgGGGCACugCuGCCGgC- -5'
31093 3' -56.9 NC_006560.1 + 49735 0.66 0.878174
Target:  5'- --gAAGccACGCCCCGgcgGuACG-CGGCCc -3'
miRNA:   3'- auaUUC--UGCGGGGCa--C-UGCuGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 50793 0.66 0.878174
Target:  5'- ----cGACGCCgUCGUGcggguggccGCGaACGGCCGc -3'
miRNA:   3'- auauuCUGCGG-GGCAC---------UGC-UGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 148676 0.66 0.878174
Target:  5'- --cGGGGCGCCgUG-GGCGGCcccggGGCCGc -3'
miRNA:   3'- auaUUCUGCGGgGCaCUGCUG-----CCGGC- -5'
31093 3' -56.9 NC_006560.1 + 67968 0.66 0.878174
Target:  5'- ----cGACGCCCCccgagGACGcgGgGGCCGc -3'
miRNA:   3'- auauuCUGCGGGGca---CUGC--UgCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 18012 0.66 0.878174
Target:  5'- --gAGGGCGCacgcgccgCCCGcGACGgcuagcGCGGCCGc -3'
miRNA:   3'- auaUUCUGCG--------GGGCaCUGC------UGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 147588 0.66 0.878174
Target:  5'- gGUGcGGC-CCCCGagggUGACGGaGGCCGg -3'
miRNA:   3'- aUAUuCUGcGGGGC----ACUGCUgCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 148624 0.66 0.877466
Target:  5'- --gGGGGCGguCCCCGacgGGCGGgccccgcCGGCCGg -3'
miRNA:   3'- auaUUCUGC--GGGGCa--CUGCU-------GCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 72184 0.66 0.877466
Target:  5'- ----cGACGCgCCGUGGCGucccacccgcugcGCGGCg- -3'
miRNA:   3'- auauuCUGCGgGGCACUGC-------------UGCCGgc -5'
31093 3' -56.9 NC_006560.1 + 57373 0.66 0.873893
Target:  5'- --gAGGAgGCCCCGaggcccgccaccagGGCcGCGGCCa -3'
miRNA:   3'- auaUUCUgCGGGGCa-------------CUGcUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 14110 0.66 0.870996
Target:  5'- --gAGGACGgcCCCCGcGcccAUGGCGGCCa -3'
miRNA:   3'- auaUUCUGC--GGGGCaC---UGCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 39469 0.66 0.870996
Target:  5'- ----cGGCGCCgCCGgcgcGGCGACggGGCCu -3'
miRNA:   3'- auauuCUGCGG-GGCa---CUGCUG--CCGGc -5'
31093 3' -56.9 NC_006560.1 + 7489 0.66 0.870996
Target:  5'- ----cGAC-CCCCGggggUGAgGACGGCCc -3'
miRNA:   3'- auauuCUGcGGGGC----ACUgCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 10496 0.66 0.870996
Target:  5'- ---cGGGgGCCCCGUcGgGuCGGCCGu -3'
miRNA:   3'- auauUCUgCGGGGCAcUgCuGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 55457 0.66 0.868802
Target:  5'- --cGGGGCGCCcggggcagggcccgCCGgcGACGACGGCg- -3'
miRNA:   3'- auaUUCUGCGG--------------GGCa-CUGCUGCCGgc -5'
31093 3' -56.9 NC_006560.1 + 115548 0.66 0.866588
Target:  5'- --cGGGGCGCgccucccgCUCGUGGCGaacguggagcagcugGCGGCCGu -3'
miRNA:   3'- auaUUCUGCG--------GGGCACUGC---------------UGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.