Results 21 - 40 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31093 | 5' | -65.8 | NC_006560.1 | + | 124114 | 0.66 | 0.480786 |
Target: 5'- cCUCuCGCCGCgGGGCacccaCGGcgucgcggCGCCggCg -3' miRNA: 3'- -GAG-GCGGCGgCCCGg----GCCa-------GCGGaaG- -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 69862 | 0.66 | 0.480786 |
Target: 5'- --gCGCCGCCuaccucccccGCUCGGUCGCgUUCg -3' miRNA: 3'- gagGCGGCGGcc--------CGGGCCAGCGgAAG- -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 83862 | 0.66 | 0.480786 |
Target: 5'- --gCGCCuCCGGGCCgaGGUCGUCc-- -3' miRNA: 3'- gagGCGGcGGCCCGGg-CCAGCGGaag -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 10920 | 0.66 | 0.471966 |
Target: 5'- -gCCGCCGCCGG---CGG-CGCCUUa -3' miRNA: 3'- gaGGCGGCGGCCcggGCCaGCGGAAg -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 142501 | 0.66 | 0.471966 |
Target: 5'- gUUCGgCGcCCGGGCCCcGG-CGCCc-- -3' miRNA: 3'- gAGGCgGC-GGCCCGGG-CCaGCGGaag -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 56375 | 0.66 | 0.471966 |
Target: 5'- cCUCuCGCgCGCgGGGCCggggaggguaCGGUUGCCc-- -3' miRNA: 3'- -GAG-GCG-GCGgCCCGG----------GCCAGCGGaag -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 83591 | 0.66 | 0.471966 |
Target: 5'- -cCCGCCGuCUGGGagCCGGggcccCGCCUcCg -3' miRNA: 3'- gaGGCGGC-GGCCCg-GGCCa----GCGGAaG- -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 57902 | 0.66 | 0.471966 |
Target: 5'- gUCCaCCGCCGcGCCCGGccccaUCGUCUcgcgUCg -3' miRNA: 3'- gAGGcGGCGGCcCGGGCC-----AGCGGA----AG- -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 1934 | 0.66 | 0.471966 |
Target: 5'- -cUCGCCGuCCGGGUCCcaguccggGGUCGCg--- -3' miRNA: 3'- gaGGCGGC-GGCCCGGG--------CCAGCGgaag -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 92738 | 0.66 | 0.471089 |
Target: 5'- -aUCGUCGCCgagggggGGGCCuCGGUgGCCa-- -3' miRNA: 3'- gaGGCGGCGG-------CCCGG-GCCAgCGGaag -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 82875 | 0.66 | 0.471089 |
Target: 5'- cCUUCGUCGCCGcGGCCgccgagaCGuUCGCCcUCg -3' miRNA: 3'- -GAGGCGGCGGC-CCGG-------GCcAGCGGaAG- -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 6115 | 0.66 | 0.469336 |
Target: 5'- -gCCGCCGCCcucaccgcgccugcGcGGCguccCCGGUUGCCUa- -3' miRNA: 3'- gaGGCGGCGG--------------C-CCG----GGCCAGCGGAag -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 144975 | 0.66 | 0.468461 |
Target: 5'- -cCCGCCcccccgacggaccCCGGGCCCGcG-CGCCcUCg -3' miRNA: 3'- gaGGCGGc------------GGCCCGGGC-CaGCGGaAG- -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 131615 | 0.66 | 0.463229 |
Target: 5'- --gCGCCGCC-GGCCCGG-CGgCggUCg -3' miRNA: 3'- gagGCGGCGGcCCGGGCCaGCgGa-AG- -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 105654 | 0.66 | 0.463229 |
Target: 5'- -cCCGUCGaCCGGGacCCCGGg-GCCUa- -3' miRNA: 3'- gaGGCGGC-GGCCC--GGGCCagCGGAag -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 65930 | 0.66 | 0.463229 |
Target: 5'- -gCCGCCcCCGcaGGUCCGGcCGCCa-- -3' miRNA: 3'- gaGGCGGcGGC--CCGGGCCaGCGGaag -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 133514 | 0.66 | 0.463229 |
Target: 5'- --gCGCCgGCCGGGgUCGG-CGgCUUCg -3' miRNA: 3'- gagGCGG-CGGCCCgGGCCaGCgGAAG- -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 21732 | 0.66 | 0.463229 |
Target: 5'- ---aGCCgGCCGGGCgCCGcccGUCGCCg-- -3' miRNA: 3'- gaggCGG-CGGCCCG-GGC---CAGCGGaag -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 71844 | 0.66 | 0.463229 |
Target: 5'- uCUUCGCgggGCCuGGGCCCGG-CgGCCgcugUCg -3' miRNA: 3'- -GAGGCGg--CGG-CCCGGGCCaG-CGGa---AG- -5' |
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31093 | 5' | -65.8 | NC_006560.1 | + | 107512 | 0.66 | 0.46236 |
Target: 5'- -aUCGCCGCgGcccucgcgggccuGGCCCGcGUCGCCc-- -3' miRNA: 3'- gaGGCGGCGgC-------------CCGGGC-CAGCGGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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