miRNA display CGI


Results 21 - 40 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31094 5' -68.1 NC_006560.1 + 107786 0.66 0.416873
Target:  5'- aCGCggcgacccucgUGCGGGUcgUCGCGCCCaCCaGCCcgcGGu -3'
miRNA:   3'- -GCG-----------GCGCCCG--AGCGCGGG-GG-CGGu--CC- -5'
31094 5' -68.1 NC_006560.1 + 142976 0.66 0.416873
Target:  5'- cCGCCGCGGcGa--GCGaCCCCCgGCCcGa -3'
miRNA:   3'- -GCGGCGCC-CgagCGC-GGGGG-CGGuCc -5'
31094 5' -68.1 NC_006560.1 + 8093 0.66 0.416873
Target:  5'- gGCUGCGGcaGCccCGCGCCgaCCGCCGc- -3'
miRNA:   3'- gCGGCGCC--CGa-GCGCGGg-GGCGGUcc -5'
31094 5' -68.1 NC_006560.1 + 42795 0.66 0.416873
Target:  5'- uGCCGCaccccGGuGCcgccccCGCGCCCCCGUCu-- -3'
miRNA:   3'- gCGGCG-----CC-CGa-----GCGCGGGGGCGGucc -5'
31094 5' -68.1 NC_006560.1 + 82146 0.66 0.416873
Target:  5'- gCGCCgagcGCGGGCUa---CCCCCG-CAGGa -3'
miRNA:   3'- -GCGG----CGCCCGAgcgcGGGGGCgGUCC- -5'
31094 5' -68.1 NC_006560.1 + 144855 0.66 0.416873
Target:  5'- uGCCcgGgGGGCUgCcCGCCgCCCGCguGGc -3'
miRNA:   3'- gCGG--CgCCCGA-GcGCGG-GGGCGguCC- -5'
31094 5' -68.1 NC_006560.1 + 99317 0.66 0.416873
Target:  5'- gGCgCGgGGGCgugCGCGCCgacggCCGCCGc- -3'
miRNA:   3'- gCG-GCgCCCGa--GCGCGGg----GGCGGUcc -5'
31094 5' -68.1 NC_006560.1 + 130542 0.66 0.416873
Target:  5'- gCGCCGCgcuGGGCguggaCGCGCaggUCGCCAcGGa -3'
miRNA:   3'- -GCGGCG---CCCGa----GCGCGgg-GGCGGU-CC- -5'
31094 5' -68.1 NC_006560.1 + 10247 0.66 0.416873
Target:  5'- gGgCGCGGG-UCGCggcgGCCCCgGCCucGGc -3'
miRNA:   3'- gCgGCGCCCgAGCG----CGGGGgCGGu-CC- -5'
31094 5' -68.1 NC_006560.1 + 57658 0.66 0.416873
Target:  5'- gCGCacaccCGGGCggcgaggCGCGCCCgCCGCgCGuGGg -3'
miRNA:   3'- -GCGgc---GCCCGa------GCGCGGG-GGCG-GU-CC- -5'
31094 5' -68.1 NC_006560.1 + 17885 0.66 0.415271
Target:  5'- aGCCaGCGGGCgccccggcggaGCGCUCCgcgcgCGCCGGc -3'
miRNA:   3'- gCGG-CGCCCGag---------CGCGGGG-----GCGGUCc -5'
31094 5' -68.1 NC_006560.1 + 129461 0.66 0.414472
Target:  5'- gGCgGgGGGCUCggagggcaacuucaGCGCCCCCGaCGu- -3'
miRNA:   3'- gCGgCgCCCGAG--------------CGCGGGGGCgGUcc -5'
31094 5' -68.1 NC_006560.1 + 46365 0.66 0.413674
Target:  5'- uGCgGCGGGCgcggggccgaguaCGUGUCCgCC-CCGGGg -3'
miRNA:   3'- gCGgCGCCCGa------------GCGCGGG-GGcGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 149236 0.66 0.413674
Target:  5'- cCGUCGagGGGCgcaucagcauaucCGgGCUUCCGCCGGGc -3'
miRNA:   3'- -GCGGCg-CCCGa------------GCgCGGGGGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 116824 0.66 0.409695
Target:  5'- cCGCCGUucgugguggucgagGGGCgguagagcaggaaGCGCuCCCCGgCGGGc -3'
miRNA:   3'- -GCGGCG--------------CCCGag-----------CGCG-GGGGCgGUCC- -5'
31094 5' -68.1 NC_006560.1 + 144343 0.66 0.408903
Target:  5'- cCGCCGCGGGCgcgagacggcCGCgggGCCgCgGCggCAGGg -3'
miRNA:   3'- -GCGGCGCCCGa---------GCG---CGGgGgCG--GUCC- -5'
31094 5' -68.1 NC_006560.1 + 58212 0.66 0.408903
Target:  5'- aGCC-CGGGCUcCGgGCUCgCCggagcgacggggGCCGGGg -3'
miRNA:   3'- gCGGcGCCCGA-GCgCGGG-GG------------CGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 78499 0.66 0.408903
Target:  5'- uCGCgCGCGGGCgcggcCGaCGCCgCCCuGCgGGa -3'
miRNA:   3'- -GCG-GCGCCCGa----GC-GCGG-GGG-CGgUCc -5'
31094 5' -68.1 NC_006560.1 + 83604 0.66 0.408903
Target:  5'- aGCCG-GGGCcC-CGCCUCCGCgCGGcGg -3'
miRNA:   3'- gCGGCgCCCGaGcGCGGGGGCG-GUC-C- -5'
31094 5' -68.1 NC_006560.1 + 34664 0.66 0.408903
Target:  5'- gGCCGgGcGGgUCGCGgggaggaaccuaCCuguCCCGCCGGGc -3'
miRNA:   3'- gCGGCgC-CCgAGCGC------------GG---GGGCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.