miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31095 3' -51.8 NC_006560.1 + 106302 0.66 0.991819
Target:  5'- cGCACGcgcGCGUgCUCGCCggccugGCUCugcgcGGCCc -3'
miRNA:   3'- -UGUGCuu-UGCA-GAGCGG------UGAGu----CUGG- -5'
31095 3' -51.8 NC_006560.1 + 87954 0.66 0.991819
Target:  5'- aGCACGAAccgcgucgugGCGUCgaCGCCGCccucguacuugCGGAUCu -3'
miRNA:   3'- -UGUGCUU----------UGCAGa-GCGGUGa----------GUCUGG- -5'
31095 3' -51.8 NC_006560.1 + 34889 0.66 0.991819
Target:  5'- aACACGgcGCGgg-CGCCGgUCAGGgUg -3'
miRNA:   3'- -UGUGCuuUGCagaGCGGUgAGUCUgG- -5'
31095 3' -51.8 NC_006560.1 + 7557 0.66 0.991819
Target:  5'- aGCGCGAGGC-UCggGCC-C-CGGGCCg -3'
miRNA:   3'- -UGUGCUUUGcAGagCGGuGaGUCUGG- -5'
31095 3' -51.8 NC_006560.1 + 49235 0.66 0.991819
Target:  5'- uCGCGAc-CGgCUCGCCGCggCGGcGCCg -3'
miRNA:   3'- uGUGCUuuGCaGAGCGGUGa-GUC-UGG- -5'
31095 3' -51.8 NC_006560.1 + 84257 0.66 0.991819
Target:  5'- uGCGCGAGGcCGgcgCGCUGCUCcGACg -3'
miRNA:   3'- -UGUGCUUU-GCagaGCGGUGAGuCUGg -5'
31095 3' -51.8 NC_006560.1 + 68376 0.66 0.991819
Target:  5'- uGCGCGAcGCGgugCUggaCGCCGCgUCcccggAGGCCa -3'
miRNA:   3'- -UGUGCUuUGCa--GA---GCGGUG-AG-----UCUGG- -5'
31095 3' -51.8 NC_006560.1 + 132617 0.66 0.991819
Target:  5'- gGCGCGGAA-GUcCUCgGCCGCcCAGccGCCg -3'
miRNA:   3'- -UGUGCUUUgCA-GAG-CGGUGaGUC--UGG- -5'
31095 3' -51.8 NC_006560.1 + 76514 0.66 0.991819
Target:  5'- cGCGCGgcGCGUCUUcgggGCgCACccgCuGACCg -3'
miRNA:   3'- -UGUGCuuUGCAGAG----CG-GUGa--GuCUGG- -5'
31095 3' -51.8 NC_006560.1 + 25104 0.66 0.991479
Target:  5'- -gGCGAGGCGcaCUCGCaccgcgccugcgcgCGCUgGGGCCu -3'
miRNA:   3'- ugUGCUUUGCa-GAGCG--------------GUGAgUCUGG- -5'
31095 3' -51.8 NC_006560.1 + 34081 0.66 0.991127
Target:  5'- -gACGAGGggggcaccgccucucUGUCUCGCCGC-CAcGCCu -3'
miRNA:   3'- ugUGCUUU---------------GCAGAGCGGUGaGUcUGG- -5'
31095 3' -51.8 NC_006560.1 + 73050 0.66 0.990641
Target:  5'- uCGCGGcuGACgGUCaaCGCC-CUCAGAUCg -3'
miRNA:   3'- uGUGCU--UUG-CAGa-GCGGuGAGUCUGG- -5'
31095 3' -51.8 NC_006560.1 + 51181 0.66 0.990641
Target:  5'- gGCGCGuccucGACGUCcuggcggUGCuCGCggagCAGACCg -3'
miRNA:   3'- -UGUGCu----UUGCAGa------GCG-GUGa---GUCUGG- -5'
31095 3' -51.8 NC_006560.1 + 103348 0.66 0.990641
Target:  5'- uGCACGAGcuucacggaGUCcCGCagcugACUCAGGCCc -3'
miRNA:   3'- -UGUGCUUug-------CAGaGCGg----UGAGUCUGG- -5'
31095 3' -51.8 NC_006560.1 + 3749 0.66 0.990641
Target:  5'- gGCGCGgcGCGggcgCggcggCGCCGCgcggCgGGACCg -3'
miRNA:   3'- -UGUGCuuUGCa---Ga----GCGGUGa---G-UCUGG- -5'
31095 3' -51.8 NC_006560.1 + 24562 0.66 0.989334
Target:  5'- aACugGAccgggccccccGACGUCUCGgCGCU-GGGCg -3'
miRNA:   3'- -UGugCU-----------UUGCAGAGCgGUGAgUCUGg -5'
31095 3' -51.8 NC_006560.1 + 118255 0.66 0.989334
Target:  5'- gGCGCGGAcCGcCgCGCCGCcCcGGCCg -3'
miRNA:   3'- -UGUGCUUuGCaGaGCGGUGaGuCUGG- -5'
31095 3' -51.8 NC_006560.1 + 31612 0.66 0.989334
Target:  5'- gACGCGGAGCcgcagugggCcCGCCGCUCccgccuccccgAGGCCg -3'
miRNA:   3'- -UGUGCUUUGca-------GaGCGGUGAG-----------UCUGG- -5'
31095 3' -51.8 NC_006560.1 + 83871 0.66 0.989334
Target:  5'- gGC-CGAGGuCGUC-CGgUACUCGGACa -3'
miRNA:   3'- -UGuGCUUU-GCAGaGCgGUGAGUCUGg -5'
31095 3' -51.8 NC_006560.1 + 33644 0.66 0.987889
Target:  5'- gGCGCcgGggGCGgccgCggGCCGCUUAGGCg -3'
miRNA:   3'- -UGUG--CuuUGCa---GagCGGUGAGUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.