miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31101 3' -60.8 NC_006560.1 + 133439 0.66 0.763505
Target:  5'- gCCCCGGCCGacccacgcguccucgGGCccGcgGGcuccgGGGcGUCCg -3'
miRNA:   3'- -GGGGCCGGCa--------------CCG--CuaCUa----CCC-CAGG- -5'
31101 3' -60.8 NC_006560.1 + 145822 0.66 0.762601
Target:  5'- gCCCGGCCucgcgcGGCGGgccgGGGGcgCCc -3'
miRNA:   3'- gGGGCCGGca----CCGCUacuaCCCCa-GG- -5'
31101 3' -60.8 NC_006560.1 + 43260 0.66 0.762601
Target:  5'- gCCgCGGUCGUGcGCGAUGAacuccuucaGGGcgCCg -3'
miRNA:   3'- -GGgGCCGGCAC-CGCUACUac-------CCCa-GG- -5'
31101 3' -60.8 NC_006560.1 + 43175 0.66 0.762601
Target:  5'- gCCCGGCCa-GGCGGgg--GGGG-CUg -3'
miRNA:   3'- gGGGCCGGcaCCGCUacuaCCCCaGG- -5'
31101 3' -60.8 NC_006560.1 + 30830 0.66 0.762601
Target:  5'- gCCCUGGCCcaGGCGcUGGgccGGGcgCCg -3'
miRNA:   3'- -GGGGCCGGcaCCGCuACUac-CCCa-GG- -5'
31101 3' -60.8 NC_006560.1 + 64046 0.66 0.762601
Target:  5'- aUCCCGccGCUGcgGGCcagGAUGGGGgCCa -3'
miRNA:   3'- -GGGGC--CGGCa-CCGcuaCUACCCCaGG- -5'
31101 3' -60.8 NC_006560.1 + 145045 0.66 0.762601
Target:  5'- aCCCCGuGCCGccgccgGGCGGccuccuccccUGGgcGGGG-CCg -3'
miRNA:   3'- -GGGGC-CGGCa-----CCGCU----------ACUa-CCCCaGG- -5'
31101 3' -60.8 NC_006560.1 + 75146 0.66 0.7535
Target:  5'- aCCUGGCgGcGGCGGUGcgGcGGGa-- -3'
miRNA:   3'- gGGGCCGgCaCCGCUACuaC-CCCagg -5'
31101 3' -60.8 NC_006560.1 + 48352 0.66 0.7535
Target:  5'- gCCCGGCgaCGUGGUGGcc-UGGGGcgacgCCc -3'
miRNA:   3'- gGGGCCG--GCACCGCUacuACCCCa----GG- -5'
31101 3' -60.8 NC_006560.1 + 5156 0.66 0.7535
Target:  5'- gCCCgGGCCGgGGcCGcgGggGcGGG-CCg -3'
miRNA:   3'- -GGGgCCGGCaCC-GCuaCuaC-CCCaGG- -5'
31101 3' -60.8 NC_006560.1 + 134447 0.66 0.747992
Target:  5'- gCCCGGCUGacGGCGcgGgcGGcccccgcgggcccgcGGUCCc -3'
miRNA:   3'- gGGGCCGGCa-CCGCuaCuaCC---------------CCAGG- -5'
31101 3' -60.8 NC_006560.1 + 26615 0.66 0.744302
Target:  5'- aCCCGcGCCGcggggGGgGggGAcGGGG-CCg -3'
miRNA:   3'- gGGGC-CGGCa----CCgCuaCUaCCCCaGG- -5'
31101 3' -60.8 NC_006560.1 + 96173 0.66 0.744302
Target:  5'- gUCCCGGaCGaGGaCGggGAgGGGGUCg -3'
miRNA:   3'- -GGGGCCgGCaCC-GCuaCUaCCCCAGg -5'
31101 3' -60.8 NC_006560.1 + 20905 0.66 0.744302
Target:  5'- uUCCCGGgCGgugGGCGcgGAgcgagGaGGG-CCg -3'
miRNA:   3'- -GGGGCCgGCa--CCGCuaCUa----C-CCCaGG- -5'
31101 3' -60.8 NC_006560.1 + 22227 0.66 0.742451
Target:  5'- gCCCCGGcCCGggccccgcgccGCGAgucGGUGuGGGUCa -3'
miRNA:   3'- -GGGGCC-GGCac---------CGCUa--CUAC-CCCAGg -5'
31101 3' -60.8 NC_006560.1 + 15322 0.66 0.735947
Target:  5'- cCUCCGcGCCGgucccguucgcggccGGCGcgGccGGGGUCg -3'
miRNA:   3'- -GGGGC-CGGCa--------------CCGCuaCuaCCCCAGg -5'
31101 3' -60.8 NC_006560.1 + 67536 0.66 0.735015
Target:  5'- gCCCCGGCCGccGCucGGUGucgGGgaucgaccgccGGUCCg -3'
miRNA:   3'- -GGGGCCGGCacCG--CUACua-CC-----------CCAGG- -5'
31101 3' -60.8 NC_006560.1 + 10198 0.66 0.735015
Target:  5'- aCCUCGGCgauggGGUGggGGUGGGGg-- -3'
miRNA:   3'- -GGGGCCGgca--CCGCuaCUACCCCagg -5'
31101 3' -60.8 NC_006560.1 + 147682 0.66 0.735015
Target:  5'- uCCUCGGCCucGGCGcgcGUGc-GGGGUCg -3'
miRNA:   3'- -GGGGCCGGcaCCGC---UACuaCCCCAGg -5'
31101 3' -60.8 NC_006560.1 + 55953 0.66 0.735015
Target:  5'- gUCCCGuaGCgGUGGgGGUGuucgGGGGggCCc -3'
miRNA:   3'- -GGGGC--CGgCACCgCUACua--CCCCa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.