miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31101 5' -53.3 NC_006560.1 + 114289 0.66 0.96957
Target:  5'- cGUGGccACGCcCGUCUcgGCgaGCCugGACu -3'
miRNA:   3'- -CACC--UGCGuGUAGAa-CG--UGGugCUGu -5'
31101 5' -53.3 NC_006560.1 + 40704 0.66 0.966427
Target:  5'- -cGGGCGCcacCAUCUUGUGCgCGgGGCu -3'
miRNA:   3'- caCCUGCGu--GUAGAACGUG-GUgCUGu -5'
31101 5' -53.3 NC_006560.1 + 46452 0.66 0.966427
Target:  5'- -gGGACGCACGUCUacugggUGguCCGgGGg- -3'
miRNA:   3'- caCCUGCGUGUAGA------ACguGGUgCUgu -5'
31101 5' -53.3 NC_006560.1 + 12590 0.66 0.966427
Target:  5'- --aGGCGCACGUgCUUgGCggccgcgcgGCCGCGACGg -3'
miRNA:   3'- cacCUGCGUGUA-GAA-CG---------UGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 101319 0.66 0.966427
Target:  5'- --cGACGCGCcgCgcggGCGCgACGGCGc -3'
miRNA:   3'- cacCUGCGUGuaGaa--CGUGgUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 76883 0.66 0.966427
Target:  5'- aUGGGCGUggcCGUUgccCGCCACGACGg -3'
miRNA:   3'- cACCUGCGu--GUAGaacGUGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 105708 0.66 0.966427
Target:  5'- cUGGAcCGCGCcUCgaGCACCuggcugaugGCGGCGg -3'
miRNA:   3'- cACCU-GCGUGuAGaaCGUGG---------UGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 127193 0.66 0.963061
Target:  5'- -cGGuaGCGCGcCGUCgucGCGCCcACGACGg -3'
miRNA:   3'- caCC--UGCGU-GUAGaa-CGUGG-UGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 139835 0.66 0.963061
Target:  5'- cUGGGCGUGCGaggCggGCucuCCGCGGCGg -3'
miRNA:   3'- cACCUGCGUGUa--GaaCGu--GGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 48097 0.66 0.963061
Target:  5'- -cGGGgGCGCGgagCUUcccGaCGCCGCGACGg -3'
miRNA:   3'- caCCUgCGUGUa--GAA---C-GUGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 24592 0.66 0.959467
Target:  5'- cUGGGCGCGCAgggcgugCUccUGCucuCCACGcGCGa -3'
miRNA:   3'- cACCUGCGUGUa------GA--ACGu--GGUGC-UGU- -5'
31101 5' -53.3 NC_006560.1 + 137751 0.66 0.959467
Target:  5'- cGUGGAgGCGCGggagCUgGCcaugGCCACGAa- -3'
miRNA:   3'- -CACCUgCGUGUa---GAaCG----UGGUGCUgu -5'
31101 5' -53.3 NC_006560.1 + 100540 0.66 0.959467
Target:  5'- -aGGACGCGC-UCcaGCugCGCGcACGc -3'
miRNA:   3'- caCCUGCGUGuAGaaCGugGUGC-UGU- -5'
31101 5' -53.3 NC_006560.1 + 130490 0.66 0.959467
Target:  5'- cUGGugGCGCGgaUCgaggccGCGCC-CGGCGg -3'
miRNA:   3'- cACCugCGUGU--AGaa----CGUGGuGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 88675 0.66 0.959467
Target:  5'- uGUGcGGCGCGgG-CUgcGCGCCGCGGCc -3'
miRNA:   3'- -CAC-CUGCGUgUaGAa-CGUGGUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 64316 0.66 0.959467
Target:  5'- -cGGGCGUACAUCUgggGCACg--GACu -3'
miRNA:   3'- caCCUGCGUGUAGAa--CGUGgugCUGu -5'
31101 5' -53.3 NC_006560.1 + 90687 0.66 0.959467
Target:  5'- gGUGGGCGC-CAuggUCUucgGCACCAacuCGGCc -3'
miRNA:   3'- -CACCUGCGuGU---AGAa--CGUGGU---GCUGu -5'
31101 5' -53.3 NC_006560.1 + 124857 0.66 0.959095
Target:  5'- cGUGGACGCGCAcacggGCAuggugggcgcgucUCugGACAu -3'
miRNA:   3'- -CACCUGCGUGUagaa-CGU-------------GGugCUGU- -5'
31101 5' -53.3 NC_006560.1 + 60717 0.66 0.95564
Target:  5'- -cGaGACGCGCAUCUcgUGgACCGacguccucuccCGACAg -3'
miRNA:   3'- caC-CUGCGUGUAGA--ACgUGGU-----------GCUGU- -5'
31101 5' -53.3 NC_006560.1 + 48878 0.66 0.95564
Target:  5'- -gGGGCGCcCGUCUccgcggcGCGCCGCG-CGa -3'
miRNA:   3'- caCCUGCGuGUAGAa------CGUGGUGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.