miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31101 5' -53.3 NC_006560.1 + 38790 1.09 0.004898
Target:  5'- gGUGGACGCACAUCUUGCACCACGACAg -3'
miRNA:   3'- -CACCUGCGUGUAGAACGUGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 42025 0.75 0.588092
Target:  5'- cUGGGCGCACG---UGCACCGCGGu- -3'
miRNA:   3'- cACCUGCGUGUagaACGUGGUGCUgu -5'
31101 5' -53.3 NC_006560.1 + 88594 0.73 0.671941
Target:  5'- --cGACGCGCAUCUcggGCGCCGCGuCc -3'
miRNA:   3'- cacCUGCGUGUAGAa--CGUGGUGCuGu -5'
31101 5' -53.3 NC_006560.1 + 130555 0.73 0.682363
Target:  5'- cGUGGACGCGCAg---GuCGCCACGGa- -3'
miRNA:   3'- -CACCUGCGUGUagaaC-GUGGUGCUgu -5'
31101 5' -53.3 NC_006560.1 + 60901 0.72 0.713327
Target:  5'- -cGGACGCGCAgcucgUCgcggaGCACCGCGAg- -3'
miRNA:   3'- caCCUGCGUGU-----AGaa---CGUGGUGCUgu -5'
31101 5' -53.3 NC_006560.1 + 126582 0.72 0.723515
Target:  5'- -cGGACGCcCGUCUggGCGCC-CGGCc -3'
miRNA:   3'- caCCUGCGuGUAGAa-CGUGGuGCUGu -5'
31101 5' -53.3 NC_006560.1 + 51242 0.72 0.723515
Target:  5'- gGUGGGCGCGCG-CcUGCACCcgcgcuCGGCGc -3'
miRNA:   3'- -CACCUGCGUGUaGaACGUGGu-----GCUGU- -5'
31101 5' -53.3 NC_006560.1 + 94967 0.72 0.723515
Target:  5'- cGUGcuGGCGCGCAUCgggggcggGCGCgGCGACGc -3'
miRNA:   3'- -CAC--CUGCGUGUAGaa------CGUGgUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 18959 0.72 0.743635
Target:  5'- -cGGGCGCcggGCGUCgcGgGCCGCGACGc -3'
miRNA:   3'- caCCUGCG---UGUAGaaCgUGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 39599 0.71 0.763343
Target:  5'- -cGGGCGCGCcggcccgCggaGCGCCGCGGCGg -3'
miRNA:   3'- caCCUGCGUGua-----Gaa-CGUGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 30573 0.71 0.773018
Target:  5'- -cGGcGCGCGCGcCUcGCGCCGCGGCc -3'
miRNA:   3'- caCC-UGCGUGUaGAaCGUGGUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 17200 0.71 0.80121
Target:  5'- -cGGGCGCACGUCcaggaGgGCCAgGACGc -3'
miRNA:   3'- caCCUGCGUGUAGaa---CgUGGUgCUGU- -5'
31101 5' -53.3 NC_006560.1 + 18013 0.7 0.819214
Target:  5'- -aGGGCGCACG-CgccGC-CCGCGACGg -3'
miRNA:   3'- caCCUGCGUGUaGaa-CGuGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 39058 0.7 0.819214
Target:  5'- -gGGugGUGCAUCgccgcgGCGCUGCGGCc -3'
miRNA:   3'- caCCugCGUGUAGaa----CGUGGUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 147112 0.7 0.827953
Target:  5'- -cGGGCGCGCGaCgcGgGCCGCGGCGc -3'
miRNA:   3'- caCCUGCGUGUaGaaCgUGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 112533 0.7 0.827953
Target:  5'- -gGGGCgGCACGUgCUgGCGcCCGCGACGg -3'
miRNA:   3'- caCCUG-CGUGUA-GAaCGU-GGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 50054 0.7 0.827953
Target:  5'- -aGGACG-ACGUCaUGgACUACGACAg -3'
miRNA:   3'- caCCUGCgUGUAGaACgUGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 149766 0.7 0.836503
Target:  5'- -gGGGCGCggggGCGUCgagGCGCCACGcCu -3'
miRNA:   3'- caCCUGCG----UGUAGaa-CGUGGUGCuGu -5'
31101 5' -53.3 NC_006560.1 + 47025 0.7 0.844858
Target:  5'- -cGGGCGCucGCAggCggcGCGCCACGACc -3'
miRNA:   3'- caCCUGCG--UGUa-Gaa-CGUGGUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 57755 0.7 0.844858
Target:  5'- -cGGcGCGCGCGUCggcgggcaGCACCACGGa- -3'
miRNA:   3'- caCC-UGCGUGUAGaa------CGUGGUGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.