miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31101 5' -53.3 NC_006560.1 + 48878 0.66 0.95564
Target:  5'- -gGGGCGCcCGUCUccgcggcGCGCCGCG-CGa -3'
miRNA:   3'- caCCUGCGuGUAGAa------CGUGGUGCuGU- -5'
31101 5' -53.3 NC_006560.1 + 73667 0.66 0.951574
Target:  5'- cGUGGACGCGguggCgcgGCGCgGCGGCc -3'
miRNA:   3'- -CACCUGCGUgua-Gaa-CGUGgUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 18321 0.66 0.951574
Target:  5'- -gGGACGCcCGUCgucgUGCG-CGCGGCc -3'
miRNA:   3'- caCCUGCGuGUAGa---ACGUgGUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 2438 0.67 0.947266
Target:  5'- -cGGuaGCGCACGUUgc-CGCCGCGGCc -3'
miRNA:   3'- caCC--UGCGUGUAGaacGUGGUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 8931 0.67 0.947266
Target:  5'- -gGGGCGCGgGgggCUuuuaUGCGCCGCGGg- -3'
miRNA:   3'- caCCUGCGUgUa--GA----ACGUGGUGCUgu -5'
31101 5' -53.3 NC_006560.1 + 102796 0.67 0.942712
Target:  5'- gGUGGAagacgggggUGCGCGUCgagucgcGCGCCgGCGACGc -3'
miRNA:   3'- -CACCU---------GCGUGUAGaa-----CGUGG-UGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 78220 0.67 0.942712
Target:  5'- cUGGACGCGCugcUCgaggcGCGCCugGGg- -3'
miRNA:   3'- cACCUGCGUGu--AGaa---CGUGGugCUgu -5'
31101 5' -53.3 NC_006560.1 + 101800 0.67 0.942712
Target:  5'- -aGGACGCcgugGCGgagcaGCGCCGCGACc -3'
miRNA:   3'- caCCUGCG----UGUagaa-CGUGGUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 107215 0.67 0.93791
Target:  5'- -cGGcugacGCGCACAgagacGCGCCGCGACc -3'
miRNA:   3'- caCC-----UGCGUGUagaa-CGUGGUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 97221 0.67 0.93791
Target:  5'- cGUGGAC-CGCAUCUUccuccgGCGCUACaACGg -3'
miRNA:   3'- -CACCUGcGUGUAGAA------CGUGGUGcUGU- -5'
31101 5' -53.3 NC_006560.1 + 94352 0.67 0.932857
Target:  5'- -cGGAC-CGCAUC-UGCaACCACGuCAc -3'
miRNA:   3'- caCCUGcGUGUAGaACG-UGGUGCuGU- -5'
31101 5' -53.3 NC_006560.1 + 103143 0.67 0.927009
Target:  5'- -cGGGCGCccucugcGCGUCUUcGuCGCCGCGAgGg -3'
miRNA:   3'- caCCUGCG-------UGUAGAA-C-GUGGUGCUgU- -5'
31101 5' -53.3 NC_006560.1 + 96614 0.68 0.921998
Target:  5'- aUGGAgaGCACGgcCUUcCACCGCGACGa -3'
miRNA:   3'- cACCUg-CGUGUa-GAAcGUGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 18408 0.68 0.921998
Target:  5'- -aGGACGCGCGcCUgcgGCugcgacccggccGCCGCGGCc -3'
miRNA:   3'- caCCUGCGUGUaGAa--CG------------UGGUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 37754 0.68 0.910133
Target:  5'- uUGGccuuguCGCGCAUCUcgcgcaGCACCgGCGGCAg -3'
miRNA:   3'- cACCu-----GCGUGUAGAa-----CGUGG-UGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 123194 0.68 0.910133
Target:  5'- -cGGACGC-CGUCU--CGCUGCGGCGg -3'
miRNA:   3'- caCCUGCGuGUAGAacGUGGUGCUGU- -5'
31101 5' -53.3 NC_006560.1 + 67878 0.68 0.910133
Target:  5'- -aGGACGUcCGggugGCGCCGCGACc -3'
miRNA:   3'- caCCUGCGuGUagaaCGUGGUGCUGu -5'
31101 5' -53.3 NC_006560.1 + 130527 0.69 0.890478
Target:  5'- -cGGugGCGCcgCgcgGCGCCGCG-Cu -3'
miRNA:   3'- caCCugCGUGuaGaa-CGUGGUGCuGu -5'
31101 5' -53.3 NC_006560.1 + 115277 0.69 0.890478
Target:  5'- --uGACGCACG-CggGCACCGCGAg- -3'
miRNA:   3'- cacCUGCGUGUaGaaCGUGGUGCUgu -5'
31101 5' -53.3 NC_006560.1 + 110203 0.69 0.890478
Target:  5'- cGUGGAuCGCGCGggcgCUccUGCugUACGugAa -3'
miRNA:   3'- -CACCU-GCGUGUa---GA--ACGugGUGCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.