miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31102 3' -59.7 NC_006560.1 + 33009 0.65 0.791989
Target:  5'- gGCAGggGGGUGGGCgggaaggCCG-GCGaggggaaggggGUCGCg -3'
miRNA:   3'- -CGUCa-CCUACCCG-------GGCgCGCa----------CAGCG- -5'
31102 3' -59.7 NC_006560.1 + 47181 0.65 0.789339
Target:  5'- cGCgAGgGGGgccgcuaccuccaGGGCCCGCGCGcG-CGCc -3'
miRNA:   3'- -CG-UCaCCUa------------CCCGGGCGCGCaCaGCG- -5'
31102 3' -59.7 NC_006560.1 + 72319 0.66 0.784003
Target:  5'- cCGGcGGAUccgGGGCCCGCcGCGccuccGUCGg -3'
miRNA:   3'- cGUCaCCUA---CCCGGGCG-CGCa----CAGCg -5'
31102 3' -59.7 NC_006560.1 + 99309 0.66 0.775009
Target:  5'- gGUGGUGGGgcgcggGGGCgUGCGCGccgacgGcCGCc -3'
miRNA:   3'- -CGUCACCUa-----CCCGgGCGCGCa-----CaGCG- -5'
31102 3' -59.7 NC_006560.1 + 127701 0.66 0.775009
Target:  5'- cGCGGUGcGUGacgguGGUCCGCGCGccgaugggGUCGg -3'
miRNA:   3'- -CGUCACcUAC-----CCGGGCGCGCa-------CAGCg -5'
31102 3' -59.7 NC_006560.1 + 149970 0.66 0.775009
Target:  5'- cGCGuGUcGGAUcGGGUCCGCGCuaccgggGcCGCg -3'
miRNA:   3'- -CGU-CA-CCUA-CCCGGGCGCGca-----CaGCG- -5'
31102 3' -59.7 NC_006560.1 + 58376 0.66 0.775009
Target:  5'- cGCGGggGGAgcGGcGCCCGCGuCGg--CGCc -3'
miRNA:   3'- -CGUCa-CCUa-CC-CGGGCGC-GCacaGCG- -5'
31102 3' -59.7 NC_006560.1 + 135318 0.66 0.765894
Target:  5'- cGgGGUgGGGUGGGCCUGCacccagcCGUcGUCGg -3'
miRNA:   3'- -CgUCA-CCUACCCGGGCGc------GCA-CAGCg -5'
31102 3' -59.7 NC_006560.1 + 22159 0.66 0.765894
Target:  5'- -uGGUGGAggagacGGCCCGgGCGcUGUCc- -3'
miRNA:   3'- cgUCACCUac----CCGGGCgCGC-ACAGcg -5'
31102 3' -59.7 NC_006560.1 + 34727 0.66 0.765894
Target:  5'- cCGG-GGGUcgcucgccgcgGcGGCCCGCGCGUcgccUCGCg -3'
miRNA:   3'- cGUCaCCUA-----------C-CCGGGCGCGCAc---AGCG- -5'
31102 3' -59.7 NC_006560.1 + 131406 0.66 0.756668
Target:  5'- gGCcGcGGAcgcgcgccccUGGGCCCGgGCc-GUCGCg -3'
miRNA:   3'- -CGuCaCCU----------ACCCGGGCgCGcaCAGCG- -5'
31102 3' -59.7 NC_006560.1 + 109309 0.66 0.756668
Target:  5'- cGCGGccgGGGUGGGUggaGUGgGUGUgGCu -3'
miRNA:   3'- -CGUCa--CCUACCCGgg-CGCgCACAgCG- -5'
31102 3' -59.7 NC_006560.1 + 34455 0.66 0.756668
Target:  5'- gGCGGUGGucgcgggGGGCguUCGCggGCGUGU-GCg -3'
miRNA:   3'- -CGUCACCua-----CCCG--GGCG--CGCACAgCG- -5'
31102 3' -59.7 NC_006560.1 + 39962 0.66 0.756668
Target:  5'- gGCGGcGGcgcGGGCggCUGCGUGUGcUCGCc -3'
miRNA:   3'- -CGUCaCCua-CCCG--GGCGCGCAC-AGCG- -5'
31102 3' -59.7 NC_006560.1 + 75200 0.66 0.756668
Target:  5'- cGCuGcUGGA-GGccGCCgCGCGCGcgGUCGCc -3'
miRNA:   3'- -CGuC-ACCUaCC--CGG-GCGCGCa-CAGCG- -5'
31102 3' -59.7 NC_006560.1 + 86252 0.66 0.747338
Target:  5'- cGCA-UGGAguaGGGCCCcggcGCGCGcaugGcCGCg -3'
miRNA:   3'- -CGUcACCUa--CCCGGG----CGCGCa---CaGCG- -5'
31102 3' -59.7 NC_006560.1 + 90315 0.66 0.747338
Target:  5'- cGCcGUGGcgcuccGGGCCCGCaacGUGgacgccGUCGCg -3'
miRNA:   3'- -CGuCACCua----CCCGGGCG---CGCa-----CAGCG- -5'
31102 3' -59.7 NC_006560.1 + 133688 0.67 0.737913
Target:  5'- cGCGcccgGGAUGGGCgCGCGCagcacGUcCGCg -3'
miRNA:   3'- -CGUca--CCUACCCGgGCGCGca---CA-GCG- -5'
31102 3' -59.7 NC_006560.1 + 99369 0.67 0.737913
Target:  5'- cGUAcUGGGgcgggGGcGCCCGCGCGcgcaUGUgCGCc -3'
miRNA:   3'- -CGUcACCUa----CC-CGGGCGCGC----ACA-GCG- -5'
31102 3' -59.7 NC_006560.1 + 121926 0.67 0.737913
Target:  5'- cGCGGgaUGGAccgcGGGCCCGgGCG---CGCg -3'
miRNA:   3'- -CGUC--ACCUa---CCCGGGCgCGCacaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.