miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31102 5' -56.1 NC_006560.1 + 98312 0.66 0.914747
Target:  5'- gGGGcugcUGGucCUGGCGggGCuGGCGGCCGCc -3'
miRNA:   3'- -CCU----ACU--GACUGCa-CGcUCGCCGGUGu -5'
31102 5' -56.1 NC_006560.1 + 126812 0.66 0.914747
Target:  5'- gGGAaguUGAg-GGCG-GCGAucGUGGCCACGg -3'
miRNA:   3'- -CCU---ACUgaCUGCaCGCU--CGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 99872 0.66 0.908809
Target:  5'- cGGggGGCgcgggggucgUGGCGgcgGCGGGCGG-CGCGg -3'
miRNA:   3'- -CCuaCUG----------ACUGCa--CGCUCGCCgGUGU- -5'
31102 5' -56.1 NC_006560.1 + 103550 0.66 0.902638
Target:  5'- aGGUGAUgcGCGUGgccucaaacacCGAGCGGCCcuGCAg -3'
miRNA:   3'- cCUACUGacUGCAC-----------GCUCGCCGG--UGU- -5'
31102 5' -56.1 NC_006560.1 + 14209 0.66 0.902638
Target:  5'- gGGGUGGuCgGGCGggGCGcccGCGGUCGCGg -3'
miRNA:   3'- -CCUACU-GaCUGCa-CGCu--CGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 90342 0.66 0.902638
Target:  5'- ---gGACgccGuCGcGCGGGCGGCCGCc -3'
miRNA:   3'- ccuaCUGa--CuGCaCGCUCGCCGGUGu -5'
31102 5' -56.1 NC_006560.1 + 125165 0.66 0.902638
Target:  5'- cGGugugGGCgGACGcGCGGGCcGGCgGCGa -3'
miRNA:   3'- -CCua--CUGaCUGCaCGCUCG-CCGgUGU- -5'
31102 5' -56.1 NC_006560.1 + 149913 0.66 0.902638
Target:  5'- aGGAacGGCggccgGGCGcgGCGucGGUGGCCGCAc -3'
miRNA:   3'- -CCUa-CUGa----CUGCa-CGC--UCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 83967 0.66 0.900741
Target:  5'- cGAcGACggcgGGCGguucgccgcccugcUGCGGGCGGCCGg- -3'
miRNA:   3'- cCUaCUGa---CUGC--------------ACGCUCGCCGGUgu -5'
31102 5' -56.1 NC_006560.1 + 87691 0.66 0.896234
Target:  5'- uGGAUGACcagGuCcuccGCGuuGGCGGCCACGg -3'
miRNA:   3'- -CCUACUGa--CuGca--CGC--UCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 59446 0.66 0.896234
Target:  5'- gGGGUG-CgucggGAgG-GCGGGCGGCCGg- -3'
miRNA:   3'- -CCUACuGa----CUgCaCGCUCGCCGGUgu -5'
31102 5' -56.1 NC_006560.1 + 33837 0.66 0.896234
Target:  5'- gGGGUcGGCcgcgGGCGUGgGGGCGcGCgCGCGu -3'
miRNA:   3'- -CCUA-CUGa---CUGCACgCUCGC-CG-GUGU- -5'
31102 5' -56.1 NC_006560.1 + 3417 0.66 0.889602
Target:  5'- cGGcgGGCgGGCGgcgggcGCGGGCGcCCGCGg -3'
miRNA:   3'- -CCuaCUGaCUGCa-----CGCUCGCcGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 80861 0.66 0.889602
Target:  5'- cGcgGGCUGgGCG-GCGggGGCGGCCAgAa -3'
miRNA:   3'- cCuaCUGAC-UGCaCGC--UCGCCGGUgU- -5'
31102 5' -56.1 NC_006560.1 + 20929 0.67 0.882745
Target:  5'- aGGAgGGCcGGCG-GCG-GCGGCgACGg -3'
miRNA:   3'- -CCUaCUGaCUGCaCGCuCGCCGgUGU- -5'
31102 5' -56.1 NC_006560.1 + 146465 0.67 0.882745
Target:  5'- cGGAggaGCggggGGCGgaGCG-GCGGCCGCGa -3'
miRNA:   3'- -CCUac-UGa---CUGCa-CGCuCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 65485 0.67 0.882745
Target:  5'- cGGAcGACUcGGCGUugcGCGGGCGGUaACc -3'
miRNA:   3'- -CCUaCUGA-CUGCA---CGCUCGCCGgUGu -5'
31102 5' -56.1 NC_006560.1 + 133561 0.67 0.875668
Target:  5'- cGGcGUGGCgGACGUcgGCGAcgaagaggGCGGCCAg- -3'
miRNA:   3'- -CC-UACUGaCUGCA--CGCU--------CGCCGGUgu -5'
31102 5' -56.1 NC_006560.1 + 16377 0.67 0.875668
Target:  5'- gGGggGGCaUGGCGgcgcggGCGGGCGucgccuggaGCCGCGg -3'
miRNA:   3'- -CCuaCUG-ACUGCa-----CGCUCGC---------CGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 39095 0.67 0.868374
Target:  5'- ----cGCUGACGcGCucGGCGGCCGCGc -3'
miRNA:   3'- ccuacUGACUGCaCGc-UCGCCGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.