miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31102 5' -56.1 NC_006560.1 + 1874 0.68 0.837149
Target:  5'- gGGGUcGCgGGCGggggucGCGGGCGGCgGCGc -3'
miRNA:   3'- -CCUAcUGaCUGCa-----CGCUCGCCGgUGU- -5'
31102 5' -56.1 NC_006560.1 + 3230 0.71 0.647391
Target:  5'- cGGcgGGCggcGGCGUGUGGGCgGGCC-CGg -3'
miRNA:   3'- -CCuaCUGa--CUGCACGCUCG-CCGGuGU- -5'
31102 5' -56.1 NC_006560.1 + 3300 0.68 0.820399
Target:  5'- gGGcgGGCgGGCG-GUGAGCG-CCGCGg -3'
miRNA:   3'- -CCuaCUGaCUGCaCGCUCGCcGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 3374 0.68 0.820399
Target:  5'- ---cGGCgGGCGgGCGGGCGGgCGCGg -3'
miRNA:   3'- ccuaCUGaCUGCaCGCUCGCCgGUGU- -5'
31102 5' -56.1 NC_006560.1 + 3417 0.66 0.889602
Target:  5'- cGGcgGGCgGGCGgcgggcGCGGGCGcCCGCGg -3'
miRNA:   3'- -CCuaCUGaCUGCa-----CGCUCGCcGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 9960 0.68 0.820399
Target:  5'- ---gGGCgucGGCGgGCGAGCGGCCuCGg -3'
miRNA:   3'- ccuaCUGa--CUGCaCGCUCGCCGGuGU- -5'
31102 5' -56.1 NC_006560.1 + 12584 0.67 0.860869
Target:  5'- uGGGgcaGGCgcACGUGCuuGGCGGCCGCGc -3'
miRNA:   3'- -CCUa--CUGacUGCACGc-UCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 14209 0.66 0.902638
Target:  5'- gGGGUGGuCgGGCGggGCGcccGCGGUCGCGg -3'
miRNA:   3'- -CCUACU-GaCUGCa-CGCu--CGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 16377 0.67 0.875668
Target:  5'- gGGggGGCaUGGCGgcgcggGCGGGCGucgccuggaGCCGCGg -3'
miRNA:   3'- -CCuaCUG-ACUGCa-----CGCUCGC---------CGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 19685 0.69 0.766337
Target:  5'- uGGcgGcgucGCUGGCGUcgGAGCGGUCGCAc -3'
miRNA:   3'- -CCuaC----UGACUGCAcgCUCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 20929 0.67 0.882745
Target:  5'- aGGAgGGCcGGCG-GCG-GCGGCgACGg -3'
miRNA:   3'- -CCUaCUGaCUGCaCGCuCGCCGgUGU- -5'
31102 5' -56.1 NC_006560.1 + 25441 0.68 0.794021
Target:  5'- cGGAcuggGACccgGACG-GCGAgccgGCGGCCGCc -3'
miRNA:   3'- -CCUa---CUGa--CUGCaCGCU----CGCCGGUGu -5'
31102 5' -56.1 NC_006560.1 + 26192 0.74 0.497281
Target:  5'- cGGAau-CUGccCGUGCGAGCGGuCCGCAg -3'
miRNA:   3'- -CCUacuGACu-GCACGCUCGCC-GGUGU- -5'
31102 5' -56.1 NC_006560.1 + 26289 0.68 0.809143
Target:  5'- gGGAgc-CUGGCGgGCGgcuucugccccgucGGCGGCCGCGu -3'
miRNA:   3'- -CCUacuGACUGCaCGC--------------UCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 26914 0.69 0.775696
Target:  5'- gGGGUGACUGGCcgcccGcCGGGgaGGCCGCGg -3'
miRNA:   3'- -CCUACUGACUGca---C-GCUCg-CCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 31711 0.68 0.803856
Target:  5'- uGGAUGACcccggugggcggcaUGcucuucgagcagggcGCGcUGCuGGGCGGCCGCAg -3'
miRNA:   3'- -CCUACUG--------------AC---------------UGC-ACG-CUCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 33472 0.72 0.626996
Target:  5'- aGGAgGAgaGGCG-GCGGGgGGCCGCc -3'
miRNA:   3'- -CCUaCUgaCUGCaCGCUCgCCGGUGu -5'
31102 5' -56.1 NC_006560.1 + 33632 0.73 0.56614
Target:  5'- gGGggGGCggggGGCGccGgGGGCGGCCGCGg -3'
miRNA:   3'- -CCuaCUGa---CUGCa-CgCUCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 33837 0.66 0.896234
Target:  5'- gGGGUcGGCcgcgGGCGUGgGGGCGcGCgCGCGu -3'
miRNA:   3'- -CCUA-CUGa---CUGCACgCUCGC-CG-GUGU- -5'
31102 5' -56.1 NC_006560.1 + 34546 0.73 0.54615
Target:  5'- gGGAUGugUGuGCGgGgGGGCGGCCGgGg -3'
miRNA:   3'- -CCUACugAC-UGCaCgCUCGCCGGUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.