miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31102 5' -56.1 NC_006560.1 + 126812 0.66 0.914747
Target:  5'- gGGAaguUGAg-GGCG-GCGAucGUGGCCACGg -3'
miRNA:   3'- -CCU---ACUgaCUGCaCGCU--CGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 39934 0.71 0.654522
Target:  5'- uGGGUGGCUGgggcccgucgguagGCGgggcggcggcGCGGGCGGCUGCGu -3'
miRNA:   3'- -CCUACUGAC--------------UGCa---------CGCUCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 133486 0.71 0.657575
Target:  5'- ---cGGCgucuacgGGCGagcGCGAGCGGCCGCGc -3'
miRNA:   3'- ccuaCUGa------CUGCa--CGCUCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 95074 0.71 0.657575
Target:  5'- cGGAgagcugGGCgGACGUcGCGGGCcgGGCCGCc -3'
miRNA:   3'- -CCUa-----CUGaCUGCA-CGCUCG--CCGGUGu -5'
31102 5' -56.1 NC_006560.1 + 130622 0.71 0.667738
Target:  5'- ---cGGCUGGCGUGgGcccGGCuGGCCGCGa -3'
miRNA:   3'- ccuaCUGACUGCACgC---UCG-CCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 51723 0.7 0.698022
Target:  5'- cGGuucugGGCcGACGcGCGGGCGGCCucGCGg -3'
miRNA:   3'- -CCua---CUGaCUGCaCGCUCGCCGG--UGU- -5'
31102 5' -56.1 NC_006560.1 + 118646 0.7 0.708018
Target:  5'- ---cGG-UGGCGUG-GGGCGGCCGCAa -3'
miRNA:   3'- ccuaCUgACUGCACgCUCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 132896 0.7 0.708018
Target:  5'- cGGucgaagGGC-GACGUGCG-GCGGCCgACGg -3'
miRNA:   3'- -CCua----CUGaCUGCACGCuCGCCGG-UGU- -5'
31102 5' -56.1 NC_006560.1 + 150037 0.7 0.708018
Target:  5'- cGGcgGGCgagGACGaccuccGCG-GCGGCCGCGc -3'
miRNA:   3'- -CCuaCUGa--CUGCa-----CGCuCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 147105 0.71 0.647391
Target:  5'- cGGggGGCgGGCGcGCGAcGCGGgCCGCGg -3'
miRNA:   3'- -CCuaCUGaCUGCaCGCU-CGCC-GGUGU- -5'
31102 5' -56.1 NC_006560.1 + 3230 0.71 0.647391
Target:  5'- cGGcgGGCggcGGCGUGUGGGCgGGCC-CGg -3'
miRNA:   3'- -CCuaCUGa--CUGCACGCUCG-CCGGuGU- -5'
31102 5' -56.1 NC_006560.1 + 33472 0.72 0.626996
Target:  5'- aGGAgGAgaGGCG-GCGGGgGGCCGCc -3'
miRNA:   3'- -CCUaCUgaCUGCaCGCUCgCCGGUGu -5'
31102 5' -56.1 NC_006560.1 + 78059 0.77 0.356814
Target:  5'- cGGA--GCUGGCGgccgGCGGcGCGGCCGCGg -3'
miRNA:   3'- -CCUacUGACUGCa---CGCU-CGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 134450 0.75 0.441403
Target:  5'- ---cGGCUGACGgcGCGGGCGGCCcccGCGg -3'
miRNA:   3'- ccuaCUGACUGCa-CGCUCGCCGG---UGU- -5'
31102 5' -56.1 NC_006560.1 + 50793 0.74 0.487738
Target:  5'- ---cGACgccGuCGUGCGGGUGGCCGCGa -3'
miRNA:   3'- ccuaCUGa--CuGCACGCUCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 26192 0.74 0.497281
Target:  5'- cGGAau-CUGccCGUGCGAGCGGuCCGCAg -3'
miRNA:   3'- -CCUacuGACu-GCACGCUCGCC-GGUGU- -5'
31102 5' -56.1 NC_006560.1 + 34546 0.73 0.54615
Target:  5'- gGGAUGugUGuGCGgGgGGGCGGCCGgGg -3'
miRNA:   3'- -CCUACugAC-UGCaCgCUCGCCGGUgU- -5'
31102 5' -56.1 NC_006560.1 + 33632 0.73 0.56614
Target:  5'- gGGggGGCggggGGCGccGgGGGCGGCCGCGg -3'
miRNA:   3'- -CCuaCUGa---CUGCa-CgCUCGCCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 87037 0.72 0.586312
Target:  5'- cGGGUGAgggUGAUGccgGCGAGCcgGGCCACGg -3'
miRNA:   3'- -CCUACUg--ACUGCa--CGCUCG--CCGGUGU- -5'
31102 5' -56.1 NC_006560.1 + 59383 0.72 0.616801
Target:  5'- -cAUGGCUgGugGUGCGggagggggGGUGGCCACGc -3'
miRNA:   3'- ccUACUGA-CugCACGC--------UCGCCGGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.