Results 21 - 40 of 612 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31103 | 5' | -70.1 | NC_006560.1 | + | 2305 | 0.66 | 0.361882 |
Target: 5'- gGGCGCgCCggcggCGGCCgCCUCGCGCg--CGGg -3' miRNA: 3'- -CCGCG-GG-----GCCGG-GGGGCGCGgagGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 69468 | 0.66 | 0.361882 |
Target: 5'- gGGCGUCCUGaggcagacGCUCgCCCGCGUCaugggcCCGGu -3' miRNA: 3'- -CCGCGGGGC--------CGGG-GGGCGCGGa-----GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 50084 | 0.66 | 0.361882 |
Target: 5'- -aCGCCgCCGGCCCCgCCG-GCggCaCGGg -3' miRNA: 3'- ccGCGG-GGCCGGGG-GGCgCGgaG-GCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 133847 | 0.66 | 0.361882 |
Target: 5'- aGGCGCUCCaGGUCCUgCGCGUaugaGGg -3' miRNA: 3'- -CCGCGGGG-CCGGGGgGCGCGgaggCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 26673 | 0.66 | 0.361882 |
Target: 5'- cGGgGCCgCggggggggacggGGCCCgcgacgagCCCGCGCCgcgggcgcgCCGGg -3' miRNA: 3'- -CCgCGGgG------------CCGGG--------GGGCGCGGa--------GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 12319 | 0.66 | 0.361165 |
Target: 5'- aGGCGCCCCaucggggaccggaGGCaCCUCgGgGCUggCGGg -3' miRNA: 3'- -CCGCGGGG-------------CCG-GGGGgCgCGGagGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 102428 | 0.66 | 0.361165 |
Target: 5'- cGGCGUCCgccuccuCGGCCgCCgcggCCGcCGUCUCCaGGg -3' miRNA: 3'- -CCGCGGG-------GCCGG-GG----GGC-GCGGAGG-CC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 118399 | 0.66 | 0.354754 |
Target: 5'- gGGCGguucgggCCCGaCCCCggggcgcggcuaCCGCGCC-CCGGg -3' miRNA: 3'- -CCGCg------GGGCcGGGG------------GGCGCGGaGGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 14096 | 0.66 | 0.354754 |
Target: 5'- cGGCaGCaCCGGUggaggacggCCCCCGCGCCcaUGGc -3' miRNA: 3'- -CCG-CGgGGCCG---------GGGGGCGCGGagGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 68813 | 0.66 | 0.354754 |
Target: 5'- cGCGggaUCgUGGCgCCCCCGCGCCUgCu- -3' miRNA: 3'- cCGC---GGgGCCG-GGGGGCGCGGAgGcc -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 24000 | 0.66 | 0.354754 |
Target: 5'- cGCGCCC--GCCCgCCCGCccGCCgacgCCGa -3' miRNA: 3'- cCGCGGGgcCGGG-GGGCG--CGGa---GGCc -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 114579 | 0.66 | 0.354754 |
Target: 5'- cGCGCCaCCGcuGCCUCgaGCGCCUCaucguGGa -3' miRNA: 3'- cCGCGG-GGC--CGGGGggCGCGGAGg----CC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 123918 | 0.66 | 0.354754 |
Target: 5'- cGuCGCCCCGcGCUgagcgcaagcggCCCC-CGCCggaggCCGGg -3' miRNA: 3'- cC-GCGGGGC-CGG------------GGGGcGCGGa----GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 56892 | 0.66 | 0.354754 |
Target: 5'- cGCG-CCgGGCCCCCCcuCGCggagCCGGc -3' miRNA: 3'- cCGCgGGgCCGGGGGGc-GCGga--GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 83722 | 0.66 | 0.354754 |
Target: 5'- cGGCGCCggGGCCCguCCCGaCGCggagCUCgGGc -3' miRNA: 3'- -CCGCGGggCCGGG--GGGC-GCG----GAGgCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 129876 | 0.66 | 0.354754 |
Target: 5'- aGGCGCgcuUCCGGCUgCgCGCGCCcgCgUGGg -3' miRNA: 3'- -CCGCG---GGGCCGGgGgGCGCGGa-G-GCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 105126 | 0.66 | 0.354754 |
Target: 5'- cGCuaCUgGGCCCCCCGgGUCgacgcgugguaCCGGg -3' miRNA: 3'- cCGcgGGgCCGGGGGGCgCGGa----------GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 36175 | 0.66 | 0.354754 |
Target: 5'- cGGCGgacCCCCGGUCCgggCUCGgGgCUCgGGg -3' miRNA: 3'- -CCGC---GGGGCCGGG---GGGCgCgGAGgCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 144491 | 0.66 | 0.354754 |
Target: 5'- cGGCcuGCCCCGucuGCCCCgCGgcCGCCUUccccgCGGg -3' miRNA: 3'- -CCG--CGGGGC---CGGGGgGC--GCGGAG-----GCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 134641 | 0.66 | 0.354047 |
Target: 5'- cGGCGgCCagaGGaccacgcacucgcCCCCCCGC-CCgCCGGc -3' miRNA: 3'- -CCGCgGGg--CC-------------GGGGGGCGcGGaGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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