miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 3' -56.9 NC_006560.1 + 11141 0.66 0.917152
Target:  5'- uCGAgGGCcccggGGCGGCG-CGGCGAgcGCGa -3'
miRNA:   3'- -GCUgCUG-----UCGCUGCuGCCGCUgcUGC- -5'
31104 3' -56.9 NC_006560.1 + 99269 0.66 0.911472
Target:  5'- gCGuACGGCuGCGG-GugGGCcGGCGGCu -3'
miRNA:   3'- -GC-UGCUGuCGCUgCugCCG-CUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 150346 0.66 0.893106
Target:  5'- cCGGCGG-GGCGGuuCGGCGGCGGgGGgGg -3'
miRNA:   3'- -GCUGCUgUCGCU--GCUGCCGCUgCUgC- -5'
31104 3' -56.9 NC_006560.1 + 82750 0.66 0.90557
Target:  5'- gGACGGCGGaCGAgGACGuCGAgGuCGg -3'
miRNA:   3'- gCUGCUGUC-GCUgCUGCcGCUgCuGC- -5'
31104 3' -56.9 NC_006560.1 + 13442 0.66 0.916594
Target:  5'- gGACG-CuGCGGCaggcgcgcuccagGACGGCGuaguacacgGCGACGg -3'
miRNA:   3'- gCUGCuGuCGCUG-------------CUGCCGC---------UGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 26800 0.66 0.922608
Target:  5'- cCGGgGAgAGCGAgacCGACGG-GGCGcGCGg -3'
miRNA:   3'- -GCUgCUgUCGCU---GCUGCCgCUGC-UGC- -5'
31104 3' -56.9 NC_006560.1 + 25448 0.66 0.899447
Target:  5'- gGACccgGACGGCGAgcCGGCGGCcgccGAgGACu -3'
miRNA:   3'- gCUG---CUGUCGCU--GCUGCCG----CUgCUGc -5'
31104 3' -56.9 NC_006560.1 + 15707 0.66 0.893106
Target:  5'- gGGCGccGCAGgGGCGGCGG-GcCGGCa -3'
miRNA:   3'- gCUGC--UGUCgCUGCUGCCgCuGCUGc -5'
31104 3' -56.9 NC_006560.1 + 50139 0.66 0.911472
Target:  5'- uGGgGGCGGCGAcucCGACGG-GGCGGa- -3'
miRNA:   3'- gCUgCUGUCGCU---GCUGCCgCUGCUgc -5'
31104 3' -56.9 NC_006560.1 + 132249 0.66 0.90557
Target:  5'- gGGCuGugGGgCGAgGACGGCGGCuucGCGu -3'
miRNA:   3'- gCUG-CugUC-GCUgCUGCCGCUGc--UGC- -5'
31104 3' -56.9 NC_006560.1 + 26517 0.66 0.919361
Target:  5'- gGGCGGgGGcCGugGGCGGgcgcgcgcggggccuCGugGGCGu -3'
miRNA:   3'- gCUGCUgUC-GCugCUGCC---------------GCugCUGC- -5'
31104 3' -56.9 NC_006560.1 + 121050 0.66 0.899447
Target:  5'- uGGCGACGG-GGCaccaggaaGACGGUGGCG-CGc -3'
miRNA:   3'- gCUGCUGUCgCUG--------CUGCCGCUGCuGC- -5'
31104 3' -56.9 NC_006560.1 + 130670 0.66 0.901923
Target:  5'- gCGuCGGCGGCGucgcUGGCGGUccgcaucgacaccggGACGGCGc -3'
miRNA:   3'- -GCuGCUGUCGCu---GCUGCCG---------------CUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3841 0.66 0.911472
Target:  5'- uCGACGA--GCGccuccAUGACGGCG-CGGCa -3'
miRNA:   3'- -GCUGCUguCGC-----UGCUGCCGCuGCUGc -5'
31104 3' -56.9 NC_006560.1 + 57011 0.66 0.922608
Target:  5'- gGugGAUcGCGAgcaggaGGCaGGCGugGGCGc -3'
miRNA:   3'- gCugCUGuCGCUg-----CUG-CCGCugCUGC- -5'
31104 3' -56.9 NC_006560.1 + 120616 0.66 0.917152
Target:  5'- cCGACGAUcGCccGCG-CGGUGGCGAgGg -3'
miRNA:   3'- -GCUGCUGuCGc-UGCuGCCGCUGCUgC- -5'
31104 3' -56.9 NC_006560.1 + 5639 0.66 0.922608
Target:  5'- cCGGCGACgGGCGGCGccCGGC--CGGCu -3'
miRNA:   3'- -GCUGCUG-UCGCUGCu-GCCGcuGCUGc -5'
31104 3' -56.9 NC_006560.1 + 146209 0.66 0.89246
Target:  5'- cCG-UGACGGUcuuguugagguagGGCGccAUGGCGACGACGc -3'
miRNA:   3'- -GCuGCUGUCG-------------CUGC--UGCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 22003 0.66 0.922608
Target:  5'- uCGGCGGCgcgGGCucgccggacccgGACGACGGCccgccGAgGACGc -3'
miRNA:   3'- -GCUGCUG---UCG------------CUGCUGCCG-----CUgCUGC- -5'
31104 3' -56.9 NC_006560.1 + 77860 0.66 0.911472
Target:  5'- gCGGCGugGGaGACGGgGGCcGgGGCGa -3'
miRNA:   3'- -GCUGCugUCgCUGCUgCCGcUgCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.