miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 3' -56.9 NC_006560.1 + 143382 0.66 0.911472
Target:  5'- aGGCGuACcgGGgGGCGGCGGCccuCGGCGc -3'
miRNA:   3'- gCUGC-UG--UCgCUGCUGCCGcu-GCUGC- -5'
31104 3' -56.9 NC_006560.1 + 139676 0.66 0.911472
Target:  5'- --uCGAgAGCGGCGACgggugagcguaGGUGAgGACGc -3'
miRNA:   3'- gcuGCUgUCGCUGCUG-----------CCGCUgCUGC- -5'
31104 3' -56.9 NC_006560.1 + 99269 0.66 0.911472
Target:  5'- gCGuACGGCuGCGG-GugGGCcGGCGGCu -3'
miRNA:   3'- -GC-UGCUGuCGCUgCugCCG-CUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 65962 0.66 0.911472
Target:  5'- aGGCG--GGCGGCG-CGGUG-CGGCGc -3'
miRNA:   3'- gCUGCugUCGCUGCuGCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 50139 0.66 0.911472
Target:  5'- uGGgGGCGGCGAcucCGACGG-GGCGGa- -3'
miRNA:   3'- gCUgCUGUCGCU---GCUGCCgCUGCUgc -5'
31104 3' -56.9 NC_006560.1 + 3841 0.66 0.911472
Target:  5'- uCGACGA--GCGccuccAUGACGGCG-CGGCa -3'
miRNA:   3'- -GCUGCUguCGC-----UGCUGCCGCuGCUGc -5'
31104 3' -56.9 NC_006560.1 + 82750 0.66 0.90557
Target:  5'- gGACGGCGGaCGAgGACGuCGAgGuCGg -3'
miRNA:   3'- gCUGCUGUC-GCUgCUGCcGCUgCuGC- -5'
31104 3' -56.9 NC_006560.1 + 132249 0.66 0.90557
Target:  5'- gGGCuGugGGgCGAgGACGGCGGCuucGCGu -3'
miRNA:   3'- gCUG-CugUC-GCUgCUGCCGCUGc--UGC- -5'
31104 3' -56.9 NC_006560.1 + 130670 0.66 0.901923
Target:  5'- gCGuCGGCGGCGucgcUGGCGGUccgcaucgacaccggGACGGCGc -3'
miRNA:   3'- -GCuGCUGUCGCu---GCUGCCG---------------CUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 25448 0.66 0.899447
Target:  5'- gGACccgGACGGCGAgcCGGCGGCcgccGAgGACu -3'
miRNA:   3'- gCUG---CUGUCGCU--GCUGCCG----CUgCUGc -5'
31104 3' -56.9 NC_006560.1 + 4099 0.66 0.899447
Target:  5'- aGGCG-CGGCG-CaGGCuGGCGGCGAgGa -3'
miRNA:   3'- gCUGCuGUCGCuG-CUG-CCGCUGCUgC- -5'
31104 3' -56.9 NC_006560.1 + 124134 0.66 0.899447
Target:  5'- aCGGCGucGCGGCGcCGGCGGgGGaGGCc -3'
miRNA:   3'- -GCUGC--UGUCGCuGCUGCCgCUgCUGc -5'
31104 3' -56.9 NC_006560.1 + 34563 0.66 0.899447
Target:  5'- gGGCGGCcgggGGUGcGCGACGGgGAgagacCGGCGg -3'
miRNA:   3'- gCUGCUG----UCGC-UGCUGCCgCU-----GCUGC- -5'
31104 3' -56.9 NC_006560.1 + 121050 0.66 0.899447
Target:  5'- uGGCGACGG-GGCaccaggaaGACGGUGGCG-CGc -3'
miRNA:   3'- gCUGCUGUCgCUG--------CUGCCGCUGCuGC- -5'
31104 3' -56.9 NC_006560.1 + 57467 0.66 0.893106
Target:  5'- aGcCGcCGGCGAUGACGccgaGCG-CGACGa -3'
miRNA:   3'- gCuGCuGUCGCUGCUGC----CGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 82096 0.66 0.893106
Target:  5'- uCGGCGACccAGC-AUGAUGGCGGuCGcGCGg -3'
miRNA:   3'- -GCUGCUG--UCGcUGCUGCCGCU-GC-UGC- -5'
31104 3' -56.9 NC_006560.1 + 15707 0.66 0.893106
Target:  5'- gGGCGccGCAGgGGCGGCGG-GcCGGCa -3'
miRNA:   3'- gCUGC--UGUCgCUGCUGCCgCuGCUGc -5'
31104 3' -56.9 NC_006560.1 + 150346 0.66 0.893106
Target:  5'- cCGGCGG-GGCGGuuCGGCGGCGGgGGgGg -3'
miRNA:   3'- -GCUGCUgUCGCU--GCUGCCGCUgCUgC- -5'
31104 3' -56.9 NC_006560.1 + 17 0.66 0.893106
Target:  5'- cCGGCGG-GGCGGuuCGGCGGCGGgGGgGg -3'
miRNA:   3'- -GCUGCUgUCGCU--GCUGCCGCUgCUgC- -5'
31104 3' -56.9 NC_006560.1 + 58236 0.66 0.89246
Target:  5'- gCGACGGgGGCcgggggccgccgaGGCGAgccgccggccuCGGCGuCGACGg -3'
miRNA:   3'- -GCUGCUgUCG-------------CUGCU-----------GCCGCuGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.