miRNA display CGI


Results 21 - 40 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 5' -54.7 NC_006560.1 + 52255 0.66 0.952714
Target:  5'- cGCGGCG-CACCGccccgaugcgggcGCGGCGuCGACg- -3'
miRNA:   3'- uCGCUGCuGUGGC-------------UGCUGCuGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 74727 0.66 0.949018
Target:  5'- gGGCGGCccuggagcacccGACccCCGAC-ACGGCGGCCGc -3'
miRNA:   3'- -UCGCUG------------CUGu-GGCUGcUGCUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 19685 0.66 0.949018
Target:  5'- uGGCGGCGuCGCUGGCGuCGgaGCggUCGc -3'
miRNA:   3'- -UCGCUGCuGUGGCUGCuGC--UGuuGGU- -5'
31104 5' -54.7 NC_006560.1 + 79265 0.66 0.949018
Target:  5'- cGCGagcccGCGAacucCCGGCGACGACu-CCGg -3'
miRNA:   3'- uCGC-----UGCUgu--GGCUGCUGCUGuuGGU- -5'
31104 5' -54.7 NC_006560.1 + 39074 0.66 0.949018
Target:  5'- cGGCGcuGCGGCcgaacgucucGCUGACGcgcuCGGCGGCCGc -3'
miRNA:   3'- -UCGC--UGCUG----------UGGCUGCu---GCUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 38132 0.66 0.949018
Target:  5'- cGC-ACGACGCCGGCGuuuUGugGGCa- -3'
miRNA:   3'- uCGcUGCUGUGGCUGCu--GCugUUGgu -5'
31104 5' -54.7 NC_006560.1 + 46924 0.66 0.949018
Target:  5'- ---cACGGCACCGACGAgGucgaGGCCGa -3'
miRNA:   3'- ucgcUGCUGUGGCUGCUgCug--UUGGU- -5'
31104 5' -54.7 NC_006560.1 + 100795 0.66 0.949018
Target:  5'- gGGCauCGGgGCCGuCGGCGGgGGCCAu -3'
miRNA:   3'- -UCGcuGCUgUGGCuGCUGCUgUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 53861 0.66 0.949018
Target:  5'- cGCGccucgcCGACGCCccgGACGACGACCc -3'
miRNA:   3'- uCGCu-----GCUGUGGcugCUGCUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 137611 0.66 0.949018
Target:  5'- cGCGGaggaGguGCGCCGGCGGCacGCGGCCGc -3'
miRNA:   3'- uCGCUg---C--UGUGGCUGCUGc-UGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 4699 0.66 0.949018
Target:  5'- cGGCGGCGcGCGCgCGGCGGCG-CucGCUg -3'
miRNA:   3'- -UCGCUGC-UGUG-GCUGCUGCuGu-UGGu -5'
31104 5' -54.7 NC_006560.1 + 15033 0.66 0.949018
Target:  5'- uGCGGCGucggagacucGCGCCgGGgGGCGACGGCg- -3'
miRNA:   3'- uCGCUGC----------UGUGG-CUgCUGCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 14562 0.66 0.949018
Target:  5'- gGGCGGCGGCGCUcacgccucgGAgGuCGcCAGCCGc -3'
miRNA:   3'- -UCGCUGCUGUGG---------CUgCuGCuGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 70310 0.66 0.949018
Target:  5'- gAGCGACGgggagcgcguguACGCCGugGuCGGggaggccccCGACCGc -3'
miRNA:   3'- -UCGCUGC------------UGUGGCugCuGCU---------GUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 71903 0.66 0.948596
Target:  5'- uGGgGAUGGgGCucuaccgCGACGGCGACGACg- -3'
miRNA:   3'- -UCgCUGCUgUG-------GCUGCUGCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 126910 0.66 0.944692
Target:  5'- gGGCcccACGACGCgGugGugGGCcggGGCCGc -3'
miRNA:   3'- -UCGc--UGCUGUGgCugCugCUG---UUGGU- -5'
31104 5' -54.7 NC_006560.1 + 14663 0.66 0.944692
Target:  5'- cGGUGAUGAUcacgaACgCGAgccCGugGGCGGCCAg -3'
miRNA:   3'- -UCGCUGCUG-----UG-GCU---GCugCUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 63604 0.66 0.944692
Target:  5'- uGGCcGCGGCGCgcACGAUGGCAuagGCCAc -3'
miRNA:   3'- -UCGcUGCUGUGgcUGCUGCUGU---UGGU- -5'
31104 5' -54.7 NC_006560.1 + 10748 0.66 0.944692
Target:  5'- cGGCcGCGACGCCGACccacgccGCGAgAAuCCAc -3'
miRNA:   3'- -UCGcUGCUGUGGCUGc------UGCUgUU-GGU- -5'
31104 5' -54.7 NC_006560.1 + 41753 0.66 0.944692
Target:  5'- cGcCGGCGGCACC-ACGAacacCGGCAGCa- -3'
miRNA:   3'- uC-GCUGCUGUGGcUGCU----GCUGUUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.