miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3111 3' -56.6 NC_001493.1 + 30827 0.66 0.857513
Target:  5'- cGGGCCGGuGGUCgGGGgGAgCAccagGUCc -3'
miRNA:   3'- -UUCGGCCuCCAGgCUCgCU-GUaa--CAG- -5'
3111 3' -56.6 NC_001493.1 + 101956 0.66 0.841422
Target:  5'- gAAGagGGGGGUCUGGGUGGCca-GUCg -3'
miRNA:   3'- -UUCggCCUCCAGGCUCGCUGuaaCAG- -5'
3111 3' -56.6 NC_001493.1 + 103661 0.66 0.841422
Target:  5'- uAGGuCUGGAGGucggaUCCGAGCG-CAUccGUCu -3'
miRNA:   3'- -UUC-GGCCUCC-----AGGCUCGCuGUAa-CAG- -5'
3111 3' -56.6 NC_001493.1 + 22558 0.67 0.806953
Target:  5'- -cGCCGGuAGGUCCGgaAGUcuaGAUGUUGUg -3'
miRNA:   3'- uuCGGCC-UCCAGGC--UCG---CUGUAACAg -5'
3111 3' -56.6 NC_001493.1 + 43882 0.67 0.797907
Target:  5'- uGGGCCGcGAcGGUCUGAGgGGCc--GUCa -3'
miRNA:   3'- -UUCGGC-CU-CCAGGCUCgCUGuaaCAG- -5'
3111 3' -56.6 NC_001493.1 + 120263 0.67 0.797907
Target:  5'- --cCCGGGGG-CCGgcAGCGGCGgggGUCa -3'
miRNA:   3'- uucGGCCUCCaGGC--UCGCUGUaa-CAG- -5'
3111 3' -56.6 NC_001493.1 + 30484 0.67 0.796078
Target:  5'- uGGUCGGGGGgaucgggucggaCgGGGCGAUcgUGUCg -3'
miRNA:   3'- uUCGGCCUCCa-----------GgCUCGCUGuaACAG- -5'
3111 3' -56.6 NC_001493.1 + 8563 0.67 0.77936
Target:  5'- cAGCCGaAGGUCCGGGUGuCcacGUCa -3'
miRNA:   3'- uUCGGCcUCCAGGCUCGCuGuaaCAG- -5'
3111 3' -56.6 NC_001493.1 + 124118 0.67 0.77936
Target:  5'- cAGCCGaAGGUCCGGGUGuCcacGUCa -3'
miRNA:   3'- uUCGGCcUCCAGGCUCGCuGuaaCAG- -5'
3111 3' -56.6 NC_001493.1 + 93365 0.67 0.769877
Target:  5'- gAAGCuCGGGGGUUCGGG-GACAUgcUCc -3'
miRNA:   3'- -UUCG-GCCUCCAGGCUCgCUGUAacAG- -5'
3111 3' -56.6 NC_001493.1 + 41731 0.67 0.769877
Target:  5'- aAAGUgGGGGcGUCUGAGCGACuc-GUUc -3'
miRNA:   3'- -UUCGgCCUC-CAGGCUCGCUGuaaCAG- -5'
3111 3' -56.6 NC_001493.1 + 64220 0.67 0.768922
Target:  5'- -cGCCGuGGGGuccgucaUCCGAGCcacCGUUGUCg -3'
miRNA:   3'- uuCGGC-CUCC-------AGGCUCGcu-GUAACAG- -5'
3111 3' -56.6 NC_001493.1 + 42862 0.78 0.248441
Target:  5'- gGGGUCGGGGGUUCGAGC-ACcgUGUCu -3'
miRNA:   3'- -UUCGGCCUCCAGGCUCGcUGuaACAG- -5'
3111 3' -56.6 NC_001493.1 + 101749 1.06 0.003111
Target:  5'- uAAGCCGGAGGUCCGAGCGACAUUGUCc -3'
miRNA:   3'- -UUCGGCCUCCAGGCUCGCUGUAACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.