miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3111 5' -62.2 NC_001493.1 + 128094 0.66 0.623276
Target:  5'- cUC-ACUGGCCcaauCUCucuCCCCCCUCa -3'
miRNA:   3'- -AGcUGACCGGu---GGGucuGGGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 12540 0.66 0.623276
Target:  5'- cUC-ACUGGCCcaauCUCucuCCCCCCUCa -3'
miRNA:   3'- -AGcUGACCGGu---GGGucuGGGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 128293 0.66 0.613369
Target:  5'- aUCGggcGCUcuCCACCgAGACCCCCaCUCc -3'
miRNA:   3'- -AGC---UGAccGGUGGgUCUGGGGG-GAGa -5'
3111 5' -62.2 NC_001493.1 + 12739 0.66 0.613369
Target:  5'- aUCGggcGCUcuCCACCgAGACCCCCaCUCc -3'
miRNA:   3'- -AGC---UGAccGGUGGgUCUGGGGG-GAGa -5'
3111 5' -62.2 NC_001493.1 + 80134 0.66 0.613369
Target:  5'- cCGACccUGGCCAUggaCgGGAUCCCCCcgCUc -3'
miRNA:   3'- aGCUG--ACCGGUG---GgUCUGGGGGGa-GA- -5'
3111 5' -62.2 NC_001493.1 + 101190 0.66 0.603475
Target:  5'- gUCGgugacACUGGUCACCUuuuuggAGACCCUuuUCa -3'
miRNA:   3'- -AGC-----UGACCGGUGGG------UCUGGGGggAGa -5'
3111 5' -62.2 NC_001493.1 + 43617 0.66 0.593601
Target:  5'- -aGAUcGGCCGCgCAgaucGACCCCCCg-- -3'
miRNA:   3'- agCUGaCCGGUGgGU----CUGGGGGGaga -5'
3111 5' -62.2 NC_001493.1 + 68281 0.66 0.583754
Target:  5'- aUGGCUGGCCcagcgugcaguuACCCAGuCCgUCgCUCUg -3'
miRNA:   3'- aGCUGACCGG------------UGGGUCuGGgGG-GAGA- -5'
3111 5' -62.2 NC_001493.1 + 51358 0.66 0.573939
Target:  5'- aUUGACccccucccgUGGCgGUCCAGGUCCCCCUCg -3'
miRNA:   3'- -AGCUG---------ACCGgUGGGUCUGGGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 106541 0.67 0.564164
Target:  5'- cUCGGgUGGgaaauaCGCCCGGGuCCCCCC-Cg -3'
miRNA:   3'- -AGCUgACCg-----GUGGGUCU-GGGGGGaGa -5'
3111 5' -62.2 NC_001493.1 + 108452 0.67 0.554432
Target:  5'- gCGAUcGGUCugUCAuGCCCCCUUCg -3'
miRNA:   3'- aGCUGaCCGGugGGUcUGGGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 129074 0.67 0.553462
Target:  5'- -aGGCucgUGGCCaucugugACCCGuACCCCCCUUa -3'
miRNA:   3'- agCUG---ACCGG-------UGGGUcUGGGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 13520 0.67 0.553462
Target:  5'- -aGGCucgUGGCCaucugugACCCGuACCCCCCUUa -3'
miRNA:   3'- agCUG---ACCGG-------UGGGUcUGGGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 25999 0.67 0.544751
Target:  5'- uUCGAacaUGGCguCCuCGGAuagguUCCCCCUCUu -3'
miRNA:   3'- -AGCUg--ACCGguGG-GUCU-----GGGGGGAGA- -5'
3111 5' -62.2 NC_001493.1 + 102320 0.67 0.535125
Target:  5'- cCGAaggGGUCGCaCCgaAGGCuCCCCCUCg -3'
miRNA:   3'- aGCUga-CCGGUG-GG--UCUG-GGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 44028 0.67 0.534166
Target:  5'- aUCGGCUcccccagGGCCcgaaauACCCGG-CCCCUCUUg -3'
miRNA:   3'- -AGCUGA-------CCGG------UGGGUCuGGGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 61299 0.67 0.51606
Target:  5'- gUGGUUGGcCCACCCGGcGCCUCaCCUCa -3'
miRNA:   3'- aGCUGACC-GGUGGGUC-UGGGG-GGAGa -5'
3111 5' -62.2 NC_001493.1 + 19403 0.68 0.487997
Target:  5'- aCGGC-GGCCGCCUcuauggagauGGGCCUCCCa-- -3'
miRNA:   3'- aGCUGaCCGGUGGG----------UCUGGGGGGaga -5'
3111 5' -62.2 NC_001493.1 + 32132 0.68 0.450858
Target:  5'- aCGGCgGGCgugcuuuCACCCauGGACCCCCC-Ca -3'
miRNA:   3'- aGCUGaCCG-------GUGGG--UCUGGGGGGaGa -5'
3111 5' -62.2 NC_001493.1 + 50543 0.69 0.422977
Target:  5'- cCGugUGGCUGggucccgguaucauCCCGGACUCCCCgccUCUg -3'
miRNA:   3'- aGCugACCGGU--------------GGGUCUGGGGGG---AGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.