miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3111 5' -62.2 NC_001493.1 + 101795 1.02 0.002037
Target:  5'- cUGACUGGCCACCCAGACCCCCCUCUu -3'
miRNA:   3'- aGCUGACCGGUGGGUCUGGGGGGAGA- -5'
3111 5' -62.2 NC_001493.1 + 115515 0.71 0.323282
Target:  5'- cUGGCUgaaugaGGCCguugAUCCAGACCCaCCCUCg -3'
miRNA:   3'- aGCUGA------CCGG----UGGGUCUGGG-GGGAGa -5'
3111 5' -62.2 NC_001493.1 + 36963 0.71 0.330462
Target:  5'- aUGACgGGCUACCCGuucGCCCCCCa-- -3'
miRNA:   3'- aGCUGaCCGGUGGGUc--UGGGGGGaga -5'
3111 5' -62.2 NC_001493.1 + 8423 0.7 0.360347
Target:  5'- uUCGGCUgcGGCUguggACCCGGGCaCCCCCcCg -3'
miRNA:   3'- -AGCUGA--CCGG----UGGGUCUG-GGGGGaGa -5'
3111 5' -62.2 NC_001493.1 + 123977 0.7 0.360347
Target:  5'- uUCGGCUgcGGCUguggACCCGGGCaCCCCCcCg -3'
miRNA:   3'- -AGCUGA--CCGG----UGGGUCUG-GGGGGaGa -5'
3111 5' -62.2 NC_001493.1 + 121140 0.7 0.368107
Target:  5'- -gGGCUGGCgCGCCUgcuGGACaCCCCUCc -3'
miRNA:   3'- agCUGACCG-GUGGG---UCUGgGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 5586 0.7 0.368107
Target:  5'- -gGGCUGGCgCGCCUgcuGGACaCCCCUCc -3'
miRNA:   3'- agCUGACCG-GUGGG---UCUGgGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 5128 0.7 0.383967
Target:  5'- cCGACUGGgacUCACCCGccaGCCCCCCg-- -3'
miRNA:   3'- aGCUGACC---GGUGGGUc--UGGGGGGaga -5'
3111 5' -62.2 NC_001493.1 + 120683 0.7 0.383967
Target:  5'- cCGACUGGgacUCACCCGccaGCCCCCCg-- -3'
miRNA:   3'- aGCUGACC---GGUGGGUc--UGGGGGGaga -5'
3111 5' -62.2 NC_001493.1 + 18222 0.69 0.400274
Target:  5'- aCGGC-GG-CACCCAGGCCCCCg--- -3'
miRNA:   3'- aGCUGaCCgGUGGGUCUGGGGGgaga -5'
3111 5' -62.2 NC_001493.1 + 133776 0.69 0.400274
Target:  5'- aCGGC-GG-CACCCAGGCCCCCg--- -3'
miRNA:   3'- aGCUGaCCgGUGGGUCUGGGGGgaga -5'
3111 5' -62.2 NC_001493.1 + 50543 0.69 0.422977
Target:  5'- cCGugUGGCUGggucccgguaucauCCCGGACUCCCCgccUCUg -3'
miRNA:   3'- aGCugACCGGU--------------GGGUCUGGGGGG---AGA- -5'
3111 5' -62.2 NC_001493.1 + 32132 0.68 0.450858
Target:  5'- aCGGCgGGCgugcuuuCACCCauGGACCCCCC-Ca -3'
miRNA:   3'- aGCUGaCCG-------GUGGG--UCUGGGGGGaGa -5'
3111 5' -62.2 NC_001493.1 + 19403 0.68 0.487997
Target:  5'- aCGGC-GGCCGCCUcuauggagauGGGCCUCCCa-- -3'
miRNA:   3'- aGCUGaCCGGUGGG----------UCUGGGGGGaga -5'
3111 5' -62.2 NC_001493.1 + 61299 0.67 0.51606
Target:  5'- gUGGUUGGcCCACCCGGcGCCUCaCCUCa -3'
miRNA:   3'- aGCUGACC-GGUGGGUC-UGGGG-GGAGa -5'
3111 5' -62.2 NC_001493.1 + 44028 0.67 0.534166
Target:  5'- aUCGGCUcccccagGGCCcgaaauACCCGG-CCCCUCUUg -3'
miRNA:   3'- -AGCUGA-------CCGG------UGGGUCuGGGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 102320 0.67 0.535125
Target:  5'- cCGAaggGGUCGCaCCgaAGGCuCCCCCUCg -3'
miRNA:   3'- aGCUga-CCGGUG-GG--UCUG-GGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 25999 0.67 0.544751
Target:  5'- uUCGAacaUGGCguCCuCGGAuagguUCCCCCUCUu -3'
miRNA:   3'- -AGCUg--ACCGguGG-GUCU-----GGGGGGAGA- -5'
3111 5' -62.2 NC_001493.1 + 129074 0.67 0.553462
Target:  5'- -aGGCucgUGGCCaucugugACCCGuACCCCCCUUa -3'
miRNA:   3'- agCUG---ACCGG-------UGGGUcUGGGGGGAGa -5'
3111 5' -62.2 NC_001493.1 + 13520 0.67 0.553462
Target:  5'- -aGGCucgUGGCCaucugugACCCGuACCCCCCUUa -3'
miRNA:   3'- agCUG---ACCGG-------UGGGUcUGGGGGGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.