Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 5586 | 0.7 | 0.368107 |
Target: 5'- -gGGCUGGCgCGCCUgcuGGACaCCCCUCc -3' miRNA: 3'- agCUGACCG-GUGGG---UCUGgGGGGAGa -5' |
|||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 121140 | 0.7 | 0.368107 |
Target: 5'- -gGGCUGGCgCGCCUgcuGGACaCCCCUCc -3' miRNA: 3'- agCUGACCG-GUGGG---UCUGgGGGGAGa -5' |
|||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 5128 | 0.7 | 0.383967 |
Target: 5'- cCGACUGGgacUCACCCGccaGCCCCCCg-- -3' miRNA: 3'- aGCUGACC---GGUGGGUc--UGGGGGGaga -5' |
|||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 120683 | 0.7 | 0.383967 |
Target: 5'- cCGACUGGgacUCACCCGccaGCCCCCCg-- -3' miRNA: 3'- aGCUGACC---GGUGGGUc--UGGGGGGaga -5' |
|||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 19403 | 0.68 | 0.487997 |
Target: 5'- aCGGC-GGCCGCCUcuauggagauGGGCCUCCCa-- -3' miRNA: 3'- aGCUGaCCGGUGGG----------UCUGGGGGGaga -5' |
|||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 44028 | 0.67 | 0.534166 |
Target: 5'- aUCGGCUcccccagGGCCcgaaauACCCGG-CCCCUCUUg -3' miRNA: 3'- -AGCUGA-------CCGG------UGGGUCuGGGGGGAGa -5' |
|||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 13520 | 0.67 | 0.553462 |
Target: 5'- -aGGCucgUGGCCaucugugACCCGuACCCCCCUUa -3' miRNA: 3'- agCUG---ACCGG-------UGGGUcUGGGGGGAGa -5' |
|||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 129074 | 0.67 | 0.553462 |
Target: 5'- -aGGCucgUGGCCaucugugACCCGuACCCCCCUUa -3' miRNA: 3'- agCUG---ACCGG-------UGGGUcUGGGGGGAGa -5' |
|||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 106541 | 0.67 | 0.564164 |
Target: 5'- cUCGGgUGGgaaauaCGCCCGGGuCCCCCC-Cg -3' miRNA: 3'- -AGCUgACCg-----GUGGGUCU-GGGGGGaGa -5' |
|||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 51358 | 0.66 | 0.573939 |
Target: 5'- aUUGACccccucccgUGGCgGUCCAGGUCCCCCUCg -3' miRNA: 3'- -AGCUG---------ACCGgUGGGUCUGGGGGGAGa -5' |
|||||||
3111 | 5' | -62.2 | NC_001493.1 | + | 101795 | 1.02 | 0.002037 |
Target: 5'- cUGACUGGCCACCCAGACCCCCCUCUu -3' miRNA: 3'- aGCUGACCGGUGGGUCUGGGGGGAGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home