miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31110 5' -46 NC_006560.1 + 66845 0.66 0.999925
Target:  5'- -gGAGGGGGGagGggGC-CGCGGcAUCc -3'
miRNA:   3'- uaUUUUUCUCagCuuCGaGCGUC-UAG- -5'
31110 5' -46 NC_006560.1 + 64714 0.66 0.9999
Target:  5'- ----------cUGGAGCUCGUAGAUCg -3'
miRNA:   3'- uauuuuucucaGCUUCGAGCGUCUAG- -5'
31110 5' -46 NC_006560.1 + 147948 0.66 0.9999
Target:  5'- ----cGGGAGgCGGgcccgGGCUCGCAGAgcUCg -3'
miRNA:   3'- uauuuUUCUCaGCU-----UCGAGCGUCU--AG- -5'
31110 5' -46 NC_006560.1 + 34485 0.66 0.999869
Target:  5'- uGUGcgGGGAGcCGggGgUCGCGGcUCc -3'
miRNA:   3'- -UAUuuUUCUCaGCuuCgAGCGUCuAG- -5'
31110 5' -46 NC_006560.1 + 55008 0.66 0.999869
Target:  5'- --cGAGGGGG-CGggGCgCGCGGAa- -3'
miRNA:   3'- uauUUUUCUCaGCuuCGaGCGUCUag -5'
31110 5' -46 NC_006560.1 + 140454 0.69 0.998632
Target:  5'- -------cGGUCGggGCUUGC-GAUCg -3'
miRNA:   3'- uauuuuucUCAGCuuCGAGCGuCUAG- -5'
31110 5' -46 NC_006560.1 + 88146 0.69 0.998333
Target:  5'- -cGGAAGGAGcccccCGGAGaCUCGCGGAg- -3'
miRNA:   3'- uaUUUUUCUCa----GCUUC-GAGCGUCUag -5'
31110 5' -46 NC_006560.1 + 100298 0.71 0.989726
Target:  5'- -gGAAGGGGgcgauggcggcGUCGAGGCUCGUgucguAGGUCa -3'
miRNA:   3'- uaUUUUUCU-----------CAGCUUCGAGCG-----UCUAG- -5'
31110 5' -46 NC_006560.1 + 22324 0.73 0.977953
Target:  5'- -----cGGAGcucgCGGAGCUCGCGGAgcUCg -3'
miRNA:   3'- uauuuuUCUCa---GCUUCGAGCGUCU--AG- -5'
31110 5' -46 NC_006560.1 + 33747 0.75 0.923384
Target:  5'- -aAAAAAGAGggGAAgacacGCUCGCGGGUCg -3'
miRNA:   3'- uaUUUUUCUCagCUU-----CGAGCGUCUAG- -5'
31110 5' -46 NC_006560.1 + 25538 1.1 0.020202
Target:  5'- aAUAAAAAGAGUCGAAGCUCGCAGAUCg -3'
miRNA:   3'- -UAUUUUUCUCAGCUUCGAGCGUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.