miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31111 5' -61.6 NC_006560.1 + 23332 0.66 0.615346
Target:  5'- gGCCGgcGCCGCGCCgccgccccGGG--ACGCCGc -3'
miRNA:   3'- -CGGCa-CGGCGUGGa-------CCCgaUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 99463 0.66 0.635303
Target:  5'- cCCGggcGCCgGCGCCggacGGGC-GCGCCGc -3'
miRNA:   3'- cGGCa--CGG-CGUGGa---CCCGaUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 10925 0.66 0.635303
Target:  5'- cGCCG-GCgGCGCCUuaaauGGCccccGCGCCAg -3'
miRNA:   3'- -CGGCaCGgCGUGGAc----CCGa---UGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 2848 0.66 0.615346
Target:  5'- gGCCGUGUCGgGCCcgcaGaGGCggUugGCCAg -3'
miRNA:   3'- -CGGCACGGCgUGGa---C-CCG--AugCGGUa -5'
31111 5' -61.6 NC_006560.1 + 70331 0.66 0.632308
Target:  5'- cGCCGUggucggggagGCCcccgaccgccugggGC-CCUGGGCcccggACGCCAUg -3'
miRNA:   3'- -CGGCA----------CGG--------------CGuGGACCCGa----UGCGGUA- -5'
31111 5' -61.6 NC_006560.1 + 50315 0.66 0.635303
Target:  5'- cGUCGgagauccugGCCGC-CCUcgcGGGCU-CGCCAc -3'
miRNA:   3'- -CGGCa--------CGGCGuGGA---CCCGAuGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 10514 0.66 0.605382
Target:  5'- gGCCGUaccacGCCGCcaucaACC-GGGggGCGCCGa -3'
miRNA:   3'- -CGGCA-----CGGCG-----UGGaCCCgaUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 89642 0.66 0.635303
Target:  5'- cGCgCGUGCCcgGCCgagGGGCUG-GCCGa -3'
miRNA:   3'- -CG-GCACGGcgUGGa--CCCGAUgCGGUa -5'
31111 5' -61.6 NC_006560.1 + 114210 0.66 0.625322
Target:  5'- aGCCccUGCCGguCUUuGGCUGCGCCc- -3'
miRNA:   3'- -CGGc-ACGGCguGGAcCCGAUGCGGua -5'
31111 5' -61.6 NC_006560.1 + 89999 0.66 0.63131
Target:  5'- cGCUGUGCgCGCGCCUcGGCcuggaccccgaccGCGCCc- -3'
miRNA:   3'- -CGGCACG-GCGUGGAcCCGa------------UGCGGua -5'
31111 5' -61.6 NC_006560.1 + 60332 0.66 0.605382
Target:  5'- -gCGUcCUGCggGCgCUGGGCUACGCCu- -3'
miRNA:   3'- cgGCAcGGCG--UG-GACCCGAUGCGGua -5'
31111 5' -61.6 NC_006560.1 + 49927 0.66 0.605382
Target:  5'- cGCCc-GCCGCGCCgaguccGGGCgUGCGCa-- -3'
miRNA:   3'- -CGGcaCGGCGUGGa-----CCCG-AUGCGgua -5'
31111 5' -61.6 NC_006560.1 + 53569 0.66 0.605382
Target:  5'- uGCgCGcGUCGCGCCcGGGCgcagcGCGCCc- -3'
miRNA:   3'- -CG-GCaCGGCGUGGaCCCGa----UGCGGua -5'
31111 5' -61.6 NC_006560.1 + 108000 0.66 0.605382
Target:  5'- gGCCGgGUCGuCGCCgc-GCUGCGCCGc -3'
miRNA:   3'- -CGGCaCGGC-GUGGaccCGAUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 54930 0.66 0.635303
Target:  5'- gGCCGggGCgGcCAUCgucgGGGCUcgcGCGCCGg -3'
miRNA:   3'- -CGGCa-CGgC-GUGGa---CCCGA---UGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 146483 0.66 0.625322
Target:  5'- aGCgGcgGCCGCgagcggagguGCCggggGGaGCUGCGCCGg -3'
miRNA:   3'- -CGgCa-CGGCG----------UGGa---CC-CGAUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 83695 0.66 0.65525
Target:  5'- gGCCGcGCCGCGCUUugcGcGGUU-CGCCGg -3'
miRNA:   3'- -CGGCaCGGCGUGGA---C-CCGAuGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 130469 0.66 0.635303
Target:  5'- gGCCGggacccCCGCACC-GGGCUggugGCGCgGa -3'
miRNA:   3'- -CGGCac----GGCGUGGaCCCGA----UGCGgUa -5'
31111 5' -61.6 NC_006560.1 + 42298 0.66 0.605382
Target:  5'- gGCCGgaaacagcagcGCCacgGCACCcagGGcGCUGCGCCGg -3'
miRNA:   3'- -CGGCa----------CGG---CGUGGa--CC-CGAUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 99971 0.66 0.615346
Target:  5'- cGCCGUcGCuCGCgucgggGCCUGGGUccgucGCGCCc- -3'
miRNA:   3'- -CGGCA-CG-GCG------UGGACCCGa----UGCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.