miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31111 5' -61.6 NC_006560.1 + 70331 0.66 0.632308
Target:  5'- cGCCGUggucggggagGCCcccgaccgccugggGC-CCUGGGCcccggACGCCAUg -3'
miRNA:   3'- -CGGCA----------CGG--------------CGuGGACCCGa----UGCGGUA- -5'
31111 5' -61.6 NC_006560.1 + 89999 0.66 0.63131
Target:  5'- cGCUGUGCgCGCGCCUcGGCcuggaccccgaccGCGCCc- -3'
miRNA:   3'- -CGGCACG-GCGUGGAcCCGa------------UGCGGua -5'
31111 5' -61.6 NC_006560.1 + 146483 0.66 0.625322
Target:  5'- aGCgGcgGCCGCgagcggagguGCCggggGGaGCUGCGCCGg -3'
miRNA:   3'- -CGgCa-CGGCG----------UGGa---CC-CGAUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 114210 0.66 0.625322
Target:  5'- aGCCccUGCCGguCUUuGGCUGCGCCc- -3'
miRNA:   3'- -CGGc-ACGGCguGGAcCCGAUGCGGua -5'
31111 5' -61.6 NC_006560.1 + 2848 0.66 0.615346
Target:  5'- gGCCGUGUCGgGCCcgcaGaGGCggUugGCCAg -3'
miRNA:   3'- -CGGCACGGCgUGGa---C-CCG--AugCGGUa -5'
31111 5' -61.6 NC_006560.1 + 23332 0.66 0.615346
Target:  5'- gGCCGgcGCCGCGCCgccgccccGGG--ACGCCGc -3'
miRNA:   3'- -CGGCa-CGGCGUGGa-------CCCgaUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 99971 0.66 0.615346
Target:  5'- cGCCGUcGCuCGCgucgggGCCUGGGUccgucGCGCCc- -3'
miRNA:   3'- -CGGCA-CG-GCG------UGGACCCGa----UGCGGua -5'
31111 5' -61.6 NC_006560.1 + 53569 0.66 0.605382
Target:  5'- uGCgCGcGUCGCGCCcGGGCgcagcGCGCCc- -3'
miRNA:   3'- -CG-GCaCGGCGUGGaCCCGa----UGCGGua -5'
31111 5' -61.6 NC_006560.1 + 60332 0.66 0.605382
Target:  5'- -gCGUcCUGCggGCgCUGGGCUACGCCu- -3'
miRNA:   3'- cgGCAcGGCG--UG-GACCCGAUGCGGua -5'
31111 5' -61.6 NC_006560.1 + 10514 0.66 0.605382
Target:  5'- gGCCGUaccacGCCGCcaucaACC-GGGggGCGCCGa -3'
miRNA:   3'- -CGGCA-----CGGCG-----UGGaCCCgaUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 42298 0.66 0.605382
Target:  5'- gGCCGgaaacagcagcGCCacgGCACCcagGGcGCUGCGCCGg -3'
miRNA:   3'- -CGGCa----------CGG---CGUGGa--CC-CGAUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 49927 0.66 0.605382
Target:  5'- cGCCc-GCCGCGCCgaguccGGGCgUGCGCa-- -3'
miRNA:   3'- -CGGcaCGGCGUGGa-----CCCG-AUGCGgua -5'
31111 5' -61.6 NC_006560.1 + 108000 0.66 0.605382
Target:  5'- gGCCGgGUCGuCGCCgc-GCUGCGCCGc -3'
miRNA:   3'- -CGGCaCGGC-GUGGaccCGAUGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 35175 0.67 0.595437
Target:  5'- cGCCGggcccgggGCCccgccccggggGCGCCgGGGCccggGCGCCGa -3'
miRNA:   3'- -CGGCa-------CGG-----------CGUGGaCCCGa---UGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 68128 0.67 0.595437
Target:  5'- cGCCGUGuuGCugucgGCCa-GGCUGCGCgCGg -3'
miRNA:   3'- -CGGCACggCG-----UGGacCCGAUGCG-GUa -5'
31111 5' -61.6 NC_006560.1 + 131402 0.67 0.595437
Target:  5'- cGCUG-GCCGCGgacgcgcgccCCUGGGCccGgGCCGUc -3'
miRNA:   3'- -CGGCaCGGCGU----------GGACCCGa-UgCGGUA- -5'
31111 5' -61.6 NC_006560.1 + 46328 0.67 0.595437
Target:  5'- aGCCG-GCCGCGCCcaGGGUaGCuCCGc -3'
miRNA:   3'- -CGGCaCGGCGUGGa-CCCGaUGcGGUa -5'
31111 5' -61.6 NC_006560.1 + 81294 0.67 0.585518
Target:  5'- gGCCGgGCCGcCGCCUuuuaucGGGCgAgGCCGa -3'
miRNA:   3'- -CGGCaCGGC-GUGGA------CCCGaUgCGGUa -5'
31111 5' -61.6 NC_006560.1 + 74653 0.67 0.585518
Target:  5'- cGCCGcgcagGCCGCGCCcccgGaGGUgcGCGCCGc -3'
miRNA:   3'- -CGGCa----CGGCGUGGa---C-CCGa-UGCGGUa -5'
31111 5' -61.6 NC_006560.1 + 57068 0.67 0.585518
Target:  5'- -aCGgaaCCaGCGCCUGGGCcaGCGCCGUc -3'
miRNA:   3'- cgGCac-GG-CGUGGACCCGa-UGCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.