miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31112 3' -63.4 NC_006560.1 + 37505 0.66 0.598356
Target:  5'- uUGCGGGguggggguuuggcgcGCCGCG-GCUCGGCcgCgCGGGc -3'
miRNA:   3'- -ACGCCC---------------CGGUGUaCGGGCCGa-G-GUCC- -5'
31112 3' -63.4 NC_006560.1 + 129928 0.66 0.594465
Target:  5'- cGCGGccggaGGCgCGCA-GCCCGGCcCCGa- -3'
miRNA:   3'- aCGCC-----CCG-GUGUaCGGGCCGaGGUcc -5'
31112 3' -63.4 NC_006560.1 + 108310 0.66 0.594465
Target:  5'- aGCGGGGUCAgc-GCCCGcGCcgcacCCAGa -3'
miRNA:   3'- aCGCCCCGGUguaCGGGC-CGa----GGUCc -5'
31112 3' -63.4 NC_006560.1 + 83354 0.66 0.594465
Target:  5'- gGCGcGGGCgGCG-GCCCggGGCcCCAGc -3'
miRNA:   3'- aCGC-CCCGgUGUaCGGG--CCGaGGUCc -5'
31112 3' -63.4 NC_006560.1 + 137 0.66 0.594465
Target:  5'- gGCGGGGCCg---GCCCcGCcCCGcGGu -3'
miRNA:   3'- aCGCCCCGGuguaCGGGcCGaGGU-CC- -5'
31112 3' -63.4 NC_006560.1 + 72629 0.66 0.594465
Target:  5'- cGCGGcacGCCGCGaGCCCGuucgcGCgagggCCGGGg -3'
miRNA:   3'- aCGCCc--CGGUGUaCGGGC-----CGa----GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 150466 0.66 0.594465
Target:  5'- gGCGGGGCCg---GCCCcGCcCCGcGGu -3'
miRNA:   3'- aCGCCCCGGuguaCGGGcCGaGGU-CC- -5'
31112 3' -63.4 NC_006560.1 + 131396 0.66 0.594465
Target:  5'- gGCGGgcgcuGGCCGCGgacgcgcGCCCcugGGC-CCGGGc -3'
miRNA:   3'- aCGCC-----CCGGUGUa------CGGG---CCGaGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 52977 0.66 0.594465
Target:  5'- cGCGGcccccgccccGGCCgacGCGUucGCCCGGCaccuggaCCGGGg -3'
miRNA:   3'- aCGCC----------CCGG---UGUA--CGGGCCGa------GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 94503 0.66 0.594465
Target:  5'- gGCGGGcgcgaGCCGCGaGCgCGGCcCCGcGGa -3'
miRNA:   3'- aCGCCC-----CGGUGUaCGgGCCGaGGU-CC- -5'
31112 3' -63.4 NC_006560.1 + 21696 0.66 0.594465
Target:  5'- gGCGGcGCCGCcgGCcgcccCCGcGCcCCGGGg -3'
miRNA:   3'- aCGCCcCGGUGuaCG-----GGC-CGaGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 70619 0.66 0.593493
Target:  5'- gGCGGGGgagCACGUGCCgGGgUUCUgcuucauGGGg -3'
miRNA:   3'- aCGCCCCg--GUGUACGGgCC-GAGG-------UCC- -5'
31112 3' -63.4 NC_006560.1 + 46263 0.66 0.593493
Target:  5'- gGCGGGaggauggguGCgCGCGUGCUCuucuucuGGCUCCuGGc -3'
miRNA:   3'- aCGCCC---------CG-GUGUACGGG-------CCGAGGuCC- -5'
31112 3' -63.4 NC_006560.1 + 32797 0.66 0.584756
Target:  5'- gGgGGGGCCGgGgGCgCGGC-CgGGGa -3'
miRNA:   3'- aCgCCCCGGUgUaCGgGCCGaGgUCC- -5'
31112 3' -63.4 NC_006560.1 + 27242 0.66 0.584756
Target:  5'- gGCGGGGCCggccccgcccaaACccGCgCCGGCcgcggCCGcGGg -3'
miRNA:   3'- aCGCCCCGG------------UGuaCG-GGCCGa----GGU-CC- -5'
31112 3' -63.4 NC_006560.1 + 114184 0.66 0.584756
Target:  5'- cGCGGGcaaCCgGCuggGCCCGGC-CCAGc -3'
miRNA:   3'- aCGCCCc--GG-UGua-CGGGCCGaGGUCc -5'
31112 3' -63.4 NC_006560.1 + 135083 0.66 0.584756
Target:  5'- cGgGGGcGCCGCcguaCCGGCgcaCCAGGc -3'
miRNA:   3'- aCgCCC-CGGUGuacgGGCCGa--GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 94454 0.66 0.584756
Target:  5'- cGCGGGcGCgCGCGcUGCgCGuGCUggaCCAGGc -3'
miRNA:   3'- aCGCCC-CG-GUGU-ACGgGC-CGA---GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 34742 0.66 0.584756
Target:  5'- cGCGGcGGCCcgcGCGUcGCCuCGcgaGCUCgAGGg -3'
miRNA:   3'- aCGCC-CCGG---UGUA-CGG-GC---CGAGgUCC- -5'
31112 3' -63.4 NC_006560.1 + 42695 0.66 0.584756
Target:  5'- aGCGGGGUCugc-GUCCGGCcgucucgcgUCAGGg -3'
miRNA:   3'- aCGCCCCGGuguaCGGGCCGa--------GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.